PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02538g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 341aa    MW: 38430.7 Da    PI: 6.665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02538g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15266290226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               ktelC+ +++tGtC+yG++C+FaHg
  Niben101Scf02538g04003.1 266 KTELCNKWQETGTCPYGENCQFAHG 290
                               9***********************8 PP
2zf-CCCH19.41.9e-06303328126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykte Cr  +++  C+yG rC+F H+
  Niben101Scf02538g04003.1 303 YKTEVCRMVLAGDMCPYGHRCHFRHS 328
                               9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18260297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-11261296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117264292IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8264291IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-12266290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-9298331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-12298331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.188302330IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5302329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MQNENPSSDG LNSSTADAAT VPSGNKSYTC TDATSPHLAH NPFLSPTSTH QFDSSEFTPN  60
FYSTFSRSSN SPSLTSFDDI DDTATDGRLH QGSYILEYQQ LYNCYTLCLA NLQESIKEVE  120
ALHQENESLR LVNSDLDRRL SLLTQATIQN CLLSDFNRFG LGVNRDSQIS DPRPPNIRPE  180
NVTEPNRPER RNVERVLLPK SISVRSSGYL KLKAQGGRNE GPSQGKTRKK AMNPPLSESQ  240
QRVYVPGSKK EEEAVEFEVY NQGMLKTELC NKWQETGTCP YGENCQFAHG ITELRPVIRH  300
PRYKTEVCRM VLAGDMCPYG HRCHFRHSLT EEERRTGPGL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-22266331570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783725.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_016455236.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N34e-72C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S3YSN50.0A0A1S3YSN5_TOBAC; zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7XB900.0A0A1U7XB90_NICSY; zinc finger CCCH domain-containing protein 14
STRINGXP_009783725.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-71C3H family protein