PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02517g15003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 385aa MW: 44768.1 Da PI: 4.4011

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02517g15003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45	2.9e-14	105	190	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+++e +L+e+ e+ +l+r++l++ +W ev++k+ + g+e+s ++C++ ++ l+k+ykk+ + ++k + +s++p+f+++ Niben101Scf02517g15003.1 105 WSEEESFVLLEVWGERYLELGRRSLRAEDWVEVAEKVtEMIGVEKSEIECRNQLDVLKKKYKKEITKMEKTGGGFHSKWPFFKKM 189 ***********************************5568******************99999988899999****** PP trihelix 86 e 86 + Niben101Scf02517g15003.1 190 D 190 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-19	104	190	No hit	No description
PROSITE profile	PS51029	8.601	105	197	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDDSDDETRY PSRPNSIYSS SLRSRRSIRN PSSYSRNTHY YGYNNNEFQY DDDDESDEEE 60 AEQEFSSGEN GYHSFQKRRK LETLVSNYEF APRSGSSHSS KGGMWSEEES FVLLEVWGER 120 YLELGRRSLR AEDWVEVAEK VTEMIGVEKS EIECRNQLDV LKKKYKKEIT KMEKTGGGFH 180 SKWPFFKKMD ILMNLRMKGH CGLGCGLDSG EYVFMDPRMY LDRSNVLDEM RDSPAGSDAD 240 NDEEEEVEGL GSGGWEGDNE SVKLLAESIQ RFGQIYEKIE NSKRKQMMEL EKMRRDFQRE 300 LELQKKQIVE RAQEEIAKIR DNDDDEDNGD EDDEETDNIS GNEKLVILNS WAQEFLYNLS 360 DTIPFTPRLG INVGSIYKDF GFVHS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDDSDDETRY PSRPNSIYSS SLRSRRSIRN PSSYSRNTHY YGYNNNEFQY DDDDESDEEE  60
AEQEFSSGEN GYHSFQKRRK LETLVSNYEF APRSGSSHSS KGGMWSEEES FVLLEVWGER  120
YLELGRRSLR AEDWVEVAEK VTEMIGVEKS EIECRNQLDV LKKKYKKEIT KMEKTGGGFH  180
SKWPFFKKMD ILMNLRMKGH CGLGCGLDSG EYVFMDPRMY LDRSNVLDEM RDSPAGSDAD  240
NDEEEEVEGL GSGGWEGDNE SVKLLAESIQ RFGQIYEKIE NSKRKQMMEL EKMRRDFQRE  300
LELQKKQIVE RAQEEIAKIR DNDDDEDNGD EDDEETDNIS GNEKLVILNS WAQEFLYNLS  360
DTIPFTPRLG INVGSIYKDF GFVHS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783625.1	0.0	PREDICTED: uncharacterized protein LOC104232187 isoform X1
Refseq	XP_009783626.1	0.0	PREDICTED: uncharacterized protein LOC104232187 isoform X2
Refseq	XP_016496917.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like isoform X1
Refseq	XP_016496918.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like isoform X2
TrEMBL	A0A1S4C6R0	0.0	A0A1S4C6R0_TOBAC; trihelix transcription factor ASIL1-like isoform X1
TrEMBL	A0A1S4C702	0.0	A0A1S4C702_TOBAC; trihelix transcription factor ASIL1-like isoform X2
TrEMBL	A0A1U7X1T4	0.0	A0A1U7X1T4_NICSY; uncharacterized protein LOC104232187 isoform X2
TrEMBL	A0A1U7XAZ1	0.0	A0A1U7XAZ1_NICSY; uncharacterized protein LOC104232187 isoform X1
STRING	XP_009783625.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-75	Trihelix family protein