PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02510g05023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 198aa MW: 22068.2 Da PI: 4.3886 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40.2 | 8.3e-13 | 24 | 120 | 5 | 96 |
NF-YB 5 drflPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 ++ lP + v r++k l +++ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f +++e+l+ Niben101Scf02510g05023.1 24 QESLPKTIVRRLVKDKLSqlsTDTDISllRDSLLAFSESARIFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPEFIETLR 108 5678888899999876541115666764467888889************************************************ PP NF-YB 85 vylkkyrelege 96 + l+ +r+ +++ Niben101Scf02510g05023.1 109 ASLEVFRKRNSK 120 ******987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-28 | 17 | 157 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.86E-22 | 25 | 134 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.7E-8 | 26 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAEIEKQKDK EKAAAAGEGV QIEQESLPKT IVRRLVKDKL SQLSTDTDIS LLRDSLLAFS 60 ESARIFIHYL SATANDICKE SKRQTINAED VFKALEEIEF PEFIETLRAS LEVFRKRNSK 120 RKSGSSKSTE SNKKAKLKEP VENGKGKMKE QPSDTENEDG LAGEQPSDNE NEDGQAAEQP 180 FDNENEDVQA EGEDSGDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 3e-11 | 18 | 137 | 9 | 125 | DNA polymerase epsilon subunit D |
5y27_A | 3e-11 | 18 | 137 | 9 | 125 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781709.1 | 1e-107 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
Refseq | XP_016488182.1 | 1e-107 | PREDICTED: DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A1S4BH59 | 1e-106 | A0A1S4BH59_TOBAC; DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A1U7X4B0 | 1e-106 | A0A1U7X4B0_NICSY; DNA polymerase epsilon subunit 3 | ||||
STRING | XP_009781709.1 | 1e-106 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 8e-38 | nuclear factor Y, subunit B11 |