PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02509g12006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 334aa MW: 37042.4 Da PI: 9.368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02509g12006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	262	307	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a++L +Av+YIk+Lq Niben101Scf02509g12006.1 262 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 307 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.57	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-16	259	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-12	260	311	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-15	261	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-13	262	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-9	262	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MFSSTVPISR EMDKFNSFLF ASGGGGSSNF KNGGELQGME NEFLRNKEIM SSDFFQQQSS 60 QFHQQQSQLR ARFSPELLTE TAIIPEIGEE IKFASSAMGS YGVGVQMQIG VRLSNVNGGG 120 SNNLMRQSSS PAGFFNGFDI TREVGNYRAA SSGANMSFSS AQSSTTNLMP SIAEIESWND 180 SSSFHSLKRN RDGVKVFSND FNGITSQNAE SRNYSTSGLT HHLSLPKTSS EMAAIEKYMQ 240 FQQDSVPCKI RAKRGCATHP RSIAERMRRT RISERMKKLQ DLFPNMDKQT NTADMLDLAV 300 DYIKDLQKQV QTLTDKKAKC SCPSKQLQYS NGTT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016485356.1	1e-162	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	3e-61	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1S4B8Y6	1e-161	A0A1S4B8Y6_TOBAC; transcription factor bHLH130-like
STRING	XP_009757642.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]