PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02509g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 344aa    MW: 38263.6 Da    PI: 6.435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02509g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-152572148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Niben101Scf02509g03007.1 25 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 72
                              678*******************************************97 PP
2Myb_DNA-binding50.35.5e-1678121146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+++++E+e +v+++  lG++ W+ Ia++++ gRt++++k++w++
  Niben101Scf02509g03007.1  78 RGAFSPQEEEHIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                               89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7682072IPR017930Myb domain
SuperFamilySSF466893.59E-2823119IPR009057Homeodomain-like
SMARTSM007173.9E-112474IPR001005SANT/Myb domain
PfamPF002497.6E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-232679IPR009057Homeodomain-like
CDDcd001679.47E-102872No hitNo description
PROSITE profilePS5129424.2973127IPR017930Myb domain
SMARTSM007175.4E-1477125IPR001005SANT/Myb domain
PfamPF002493.0E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2580128IPR009057Homeodomain-like
CDDcd001677.19E-1080120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRKPVHPSIM KEKGNNNNIK AKLRKGLWSP EEDEKLMNYM LTNGQGCWSD IARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEEHIV HLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNN NNNNNNSSNN TSSPNTSDSS SEPRALMGGI IPMQGHDVNH VMAAICMDNS  180
SSGSNHFNPF PQLDNTNYDI IGAGLYNFPP CLGQFDGDGG VVDYGVVENY STMGLGSDIS  240
VPTLEGGGNR SMGEINNNVN FSSSTITAAN IDYNSLIEKK TIGNNNQQLM LSESSDQSLK  300
IEDYMVGFGN HHHWHGESLR IGEFDWEGLL ANVSSLPYLD FPVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26231275108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612035.10.0PREDICTED: myb-related protein Hv33-like
RefseqXP_016432968.10.0PREDICTED: myb-related protein Hv33-like
TrEMBLA0A1S3WZJ00.0A0A1S3WZJ0_TOBAC; myb-related protein Hv33-like
STRINGXP_009612035.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-73myb domain protein 83