PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02502g03010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 155aa MW: 17454.9 Da PI: 10.5526 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c+ rw++yl Niben101Scf02502g03010.1 14 RGPWSPEEDAILKEYIGKYGTGgNWISLPQKAGLRRCGKSCRMRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 25.9 | 2.3e-08 | 76 | 99 | 22 | 46 |
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 ++W+ Ia+ ++ gRt++++k++w++ Niben101Scf02502g03010.1 76 RQWSIIAAQLP-GRTDNNIKNYWNT 99 38*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 5 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.373 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.52E-24 | 14 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.39E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 8.596 | 67 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7 | 67 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-6 | 76 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 76 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGRAPCCDKG NVKRGPWSPE EDAILKEYIG KYGTGGNWIS LPQKAGLRRC GKSCRMRWLN 60 YLRPNIKHGE FSDERRQWSI IAAQLPGRTD NNIKNYWNTQ LKKKLMSLVS SPQQIRLIHQ 120 TICHSSISPL QANSSIVSSL HSSQSQSSLI SNNSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-18 | 11 | 105 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009602472.1 | 7e-82 | PREDICTED: transcription factor RAX2-like | ||||
Swissprot | Q9FKL2 | 3e-61 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A1S3YU11 | 3e-80 | A0A1S3YU11_TOBAC; transcription factor RAX2-like | ||||
STRING | XP_009602472.1 | 3e-81 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-62 | myb domain protein 36 |
Publications ? help Back to Top | |||
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