PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02502g03010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 155aa    MW: 17454.9 Da    PI: 10.5526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02502g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l++++ ++G+g +W + +++ g++R++k+c+ rw++yl
  Niben101Scf02502g03010.1 14 RGPWSPEEDAILKEYIGKYGTGgNWISLPQKAGLRRCGKSCRMRWLNYL 62
                              89*********************************************97 PP

2Myb_DNA-binding25.92.3e-0876992246
                              T-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                              ++W+ Ia+ ++ gRt++++k++w++
  Niben101Scf02502g03010.1 76 RQWSIIAAQLP-GRTDNNIKNYWNT 99
                              38*********.***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-22572IPR009057Homeodomain-like
PROSITE profilePS5129420.373966IPR017930Myb domain
SMARTSM007173.2E-111364IPR001005SANT/Myb domain
PfamPF002492.9E-141462IPR001005SANT/Myb domain
SuperFamilySSF466897.52E-2414102IPR009057Homeodomain-like
CDDcd001674.39E-81662No hitNo description
PROSITE profilePS512948.59667105IPR017930Myb domain
SMARTSM007173.767103IPR001005SANT/Myb domain
PfamPF002491.9E-676100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-1176105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRAPCCDKG NVKRGPWSPE EDAILKEYIG KYGTGGNWIS LPQKAGLRRC GKSCRMRWLN  60
YLRPNIKHGE FSDERRQWSI IAAQLPGRTD NNIKNYWNTQ LKKKLMSLVS SPQQIRLIHQ  120
TICHSSISPL QANSSIVSSL HSSQSQSSLI SNNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-18111054108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602472.17e-82PREDICTED: transcription factor RAX2-like
SwissprotQ9FKL23e-61MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1S3YU113e-80A0A1S3YU11_TOBAC; transcription factor RAX2-like
STRINGXP_009602472.13e-81(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-62myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]