PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02486g06007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 450aa    MW: 50870.8 Da    PI: 7.3654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02486g06007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf02486g06007.1 14 KGLWSPEEDEKLIQHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              678*******************************************97 PP
2Myb_DNA-binding45.71.5e-1467109145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg +++eE+ l++++++ lG++ W+ Ia +++ gRt++++k+ w+
  Niben101Scf02486g06007.1  67 RGTFSQEEENLIIELHAVLGNK-WSQIATRLP-GRTDNEIKNLWN 109
                               899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.578965IPR017930Myb domain
SuperFamilySSF466891.8E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001677.12E-121761No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.31366116IPR017930Myb domain
SMARTSM007176.4E-1366114IPR001005SANT/Myb domain
PfamPF002491.9E-1367109IPR001005SANT/Myb domain
CDDcd001673.46E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIQHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVENEEKASA NSNNKNTDKV SESSNNDQLN FGEAARENGF SIENPKPSSM  180
TIMDRYPLIE TNSIAPPTHE FFTTNCKSPD FSNYLSFQHL NNYTPSTNIL FNNKNSAHDM  240
VSDHQFNCSL SPMSNSLLTT SPLARIKSPS LTTLPPTNSS FNINKFQNWE ACTISSNSNG  300
SSNSIELQSN CSFFDNNAAA FAWGSTAAAD GSGKPEREEI KWSEYLQTPF SLGSNTIQNH  360
QISSQHQDLY NNETKSETQF MTQXNHQISS QHQDLYNNET KSETHFMTQS SLGTTTTWLQ  420
NQAQESSLQN ANLYNSNTYQ RLPAAFGQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240029.10.0PREDICTED: protein ODORANT1-like
TrEMBLA0A1J6JTQ70.0A0A1J6JTQ7_NICAT; Transcription factor myb86
STRINGXP_009769917.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.13e-94myb domain protein 61