PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02486g03001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 120aa MW: 14076.8 Da PI: 9.8078 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30 | 1.7e-09 | 54 | 108 | 2 | 57 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 Yn+YA GF+vrk + + rn+e+t+ f Cs egk+++ ++ +e++r++r+ Niben101Scf02486g03001.1 54 AYNSYAVAKGFDVRKGPRTVN-RNKEMTRCLFLCSGEGKSDKLSHFQERKRQRREL 108 5***************97777.8888****************99997777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-6 | 54 | 108 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
METTTVPTTP VSYQDHNSND EKNAPMIHNV YHIDKNFAFK IGMKFGFEEE SYNAYNSYAV 60 AKGFDVRKGP RTVNRNKEMT RCLFLCSGEG KSDKLSHFQE RKRQRRELET FHTIRSKAYK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266793.1 | 1e-33 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A1J6JS56 | 7e-45 | A0A1J6JS56_NICAT; Protein far1-related sequence 5 | ||||
STRING | XP_009628526.1 | 3e-31 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1726 | 9 | 31 |