PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02482g02011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 468aa    MW: 53107.3 Da    PI: 7.2033
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02482g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-09419466347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 
                               +W++ E++ l  +v+++G+g+W+ I +t        Rt+ ++k++w++ 
  Niben101Scf02482g02011.1 419 KWSALEEDTLRTGVQKYGSGNWTHILNTYRdifiV-RTAGDLKDKWRNM 466
                               8********************************55.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.729412468IPR017930Myb domain
SuperFamilySSF466891.4E-13414467IPR009057Homeodomain-like
SMARTSM007170.0044416468IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10418467IPR009057Homeodomain-like
PfamPF002496.0E-8419466IPR001005SANT/Myb domain
CDDcd116605.55E-16419467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDIDISRWIL GFILRQPLDD SILNALIHTL PLPNDNLNLK KALILRKLES EISNSSVTEK  60
ILELLELFEE LDHQEGTETL KEMKSAYCAV AVECTVKFLN EKGAESDKGK YFEAVKRIWK  120
KRINLMEKIE NVGFVCEELW DWRDEIEAAL WEDKCCDNVI RRSKGIFPVE AVKVFVREAK  180
ERIGPPFLDV VAETYRSDDA VREIFGGVNE QRTCRNSVRE VRKGNALPRQ KHVAFRRTRG  240
ASAGTCGGVK ISDSIELGLD ASGGQDSFLP MPEIEKAQEA LKLSSKELRD MVKDPLPDAL  300
QFAETLSSLV RDHMGHQPAQ KNSDRAPHPV VASSKLDQTN GENCEAQCNC HPNAASKPDL  360
MNRRSAAHTS ERDDSADELN EESPSGTRRF TLPSPKRTKN SPLKKYEFKN FTTRRKPTKW  420
SALEEDTLRT GVQKYGSGNW THILNTYRDI FIVRTAGDLK DKWRNMMS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772851.10.0PREDICTED: uncharacterized protein LOC104223173
RefseqXP_016477615.10.0PREDICTED: uncharacterized protein LOC107799057
TrEMBLA0A1S4ALX60.0A0A1S4ALX6_TOBAC; uncharacterized protein LOC107799057
TrEMBLA0A1U7W6M40.0A0A1U7W6M4_NICSY; uncharacterized protein LOC104223173
STRINGXP_009772851.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-15MYB_related family protein