PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02440g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 284aa MW: 32203.9 Da PI: 5.9017

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02440g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.9	1.1e-28	223	273	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQ Niben101Scf02440g00011.1 223 KQRRCWSPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQ 273 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.639	220	280	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-24	221	273	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-14	221	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	223	273	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-6	225	273	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MMINNHENNY TEKMQRCQQY IDALEQERNK IQVFSRELPL CLELVTQAIE TYKQQLSGTT 60 TEYNINTQSD VECSEEHTSS DVPILEEFIP LKGTFSHEDE DEDEDERDSH KSKSYNISDT 120 SCSKDNKNSD KSCKKSDWLR SVQLWNNNQT PDPTPKEELT PKKVAVVEVK KNGSGGAFHP 180 FKKEKSAAAS TEPPTSAVVT AAASSTAETG NRSKKEEKDE KRKQRRCWSP ELHRRFLQAL 240 QQLGGSHVAT PKQIRELMKV DGLTNDEVKS HLQGVAMVML TQVI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256850.1	1e-170	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9FPE8	7e-83	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A1J6HTQ8	1e-168	A0A1J6HTQ8_NICAT; Myb family transcription factor efm
STRING	XP_009788853.1	1e-164	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-64	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]