PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02440g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 453aa MW: 50181.5 Da PI: 6.4491

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02440g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.6e-05	345	382	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L Niben101Scf02440g00004.1 345 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 382 5566777888888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	333	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-11	343	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.02E-4	343	386	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-7	347	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNNDESGNS 60 DDSVVLQELP KHHQQPHDST LQMLGIGLSS STSSSTPDWN HTMMHGNERG DSSYHSILQE 120 DLNSSLNYRQ ETGVDELGKN FSTITEDSSN NSFKHQDFTL GMNPITTSTN TDQSTVISSS 180 FPMNSSFSNY PSALLQTLFD NDPPPPPPPQ QQPQQQSLFT NNNQPMNFPV SLNYRPNLSD 240 HFSPSLPKFP PLLRPSLPKQ TPSSFPFTNP TSLNNMRGNL LPTMHSQLLL QSPTFHEKSS 300 VPNNSAKSNV EEFRESRVKK SGNSEPALKR PRMETPSPLP TFKVRKEKLG DRITAIQQLV 360 SPFGKTDTAS VLHEAIEYIK FLHDQVNVLS TPYLKTGSPP LHQQSADKVK EQEGSKQDLR 420 SRGLSLVPIS STFPVATETT TDFWTPNFGG TFR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNNDESGNS  60
DDSVVLQELP KHHQQPHDST LQMLGIGLSS STSSSTPDWN HTMMHGNERG DSSYHSILQE  120
DLNSSLNYRQ ETGVDELGKN FSTITEDSSN NSFKHQDFTL GMNPITTSTN TDQSTVISSS  180
FPMNSSFSNY PSALLQTLFD NDPPPPPPPQ QQPQQQSLFT NNNQPMNFPV SLNYRPNLSD  240
HFSPSLPKFP PLLRPSLPKQ TPSSFPFTNP TSLNNMRGNL LPTMHSQLLL QSPTFHEKSS  300
VPNNSAKSNV EEFRESRVKK SGNSEPALKR PRMETPSPLP TFKVRKEKLG DRITAIQQLV  360
SPFGKTDTAS VLHEAIEYIK FLHDQVNVLS TPYLKTGSPP LHQQSADKVK EQEGSKQDLR  420
SRGLSLVPIS STFPVATETT TDFWTPNFGG TFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764035.1	0.0	PREDICTED: transcription factor bHLH112-like
Refseq	XP_016490372.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1S4BNE2	0.0	A0A1S4BNE2_TOBAC; transcription factor bHLH112-like
TrEMBL	A0A1U7VQ73	0.0	A0A1U7VQ73_NICSY; transcription factor bHLH112-like
STRING	XP_009764035.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	7e-55	bHLH family protein