PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02437g08005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 305aa    MW: 33719.9 Da    PI: 4.0104
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02437g08005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-182171155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              s+y+GVr +k +g+Wv+e+r p++   r r++lg+++tae+Aaka +aa  +l+g
  Niben101Scf02437g08005.1 21 SKYRGVRKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAAKAFDAALFCLRG 71
                              89*****999.*******999833...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-112171IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-202180IPR016177DNA-binding domain
CDDcd000181.69E-282281No hitNo description
Gene3DG3DSA:3.30.730.104.2E-292280IPR001471AP2/ERF domain
PROSITE profilePS5103222.1152279IPR001471AP2/ERF domain
SMARTSM003805.6E-322285IPR001471AP2/ERF domain
PRINTSPR003674.2E-102334IPR001471AP2/ERF domain
PRINTSPR003674.2E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVKPNGKDSC ENSPSSSSSS SKYRGVRKRK WGKWVSEVRL PNSRERIWLG SYDTAEKAAK  60
AFDAALFCLR GKTANFNFPE NPPEIVNGRS MTPAEIQVAA AQFANSDSEP RVSNWVNPRD  120
NSDPSSSSSD MYCAESPSVS VSNGLVGLES EKTEMTLDNG FVDMFSSMGT TNDMSDFGIF  180
PGFDDLSGEY YVPPLPNLDN TAEENYMNYD EFHLQGSSPS VSVSNGLVGL ESEKTEMTLD  240
NGFVDMFSSM GTTNDMSDFG IFPGFDDLSG EYYVPPLPNL DNTAEENYMN YDEFHLQGSS  300
FLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-161780973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624342.11e-146PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC22e-54ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1S3XUX51e-144A0A1S3XUX5_TOBAC; ethylene-responsive transcription factor ERF017-like
STRINGXP_009624342.11e-145(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]