PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02408g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 26498.2 Da PI: 5.8968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 108 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ +++g Niben101Scf02408g00021.1 108 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDKAAIEFRG 157 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-38 | 108 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 108 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.829 | 108 | 165 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.92E-33 | 108 | 164 | No hit | No description |
Pfam | PF00847 | 4.1E-14 | 108 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 108 | 165 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-12 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-12 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MQRSNERYRE DGTSYTDQNN QQFSHFPRLT GEEEYSVMVS ALKNVINGVP AEQEPCPFCR 60 IKGCLGCDIF GTTSSAAVNF AEPKVVAADD NKKKSATTTA VTKKKKKNYR GVRQRPWGKW 120 AAEIRDPRKA ARVWLGTFNT AEDAARAYDK AAIEFRGPRA KLNFSFADYT ETQEQQSASS 180 SSPQQLPEPQ LQQGSNTEFG NEIWDQLMGD NEIQDWLTMM NFNGDSSDST GGNVHSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-24 | 105 | 164 | 2 | 62 | ATERF1 |
3gcc_A | 8e-24 | 105 | 164 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 106 | KKKSATTTAVTKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502425.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 7e-32 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S4CMZ7 | 1e-130 | A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009609381.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-29 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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