PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02407g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 349aa    MW: 39344.6 Da    PI: 8.7921
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02407g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.7e-1936129186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsesss 77 
                               +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ +  r  g+   ++++qC++k+e+l+kry+ + +++      r+ +  s
  Niben101Scf02407g02002.1  36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCS 120
                               8************************************976555665589*****************9988876411113455556 PP

                  trihelix  78 tcpyfdqle 86 
                                +++f++++
  Niben101Scf02407g02002.1 121 AWVLFKRMD 129
                               777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2035131No hitNo description
PROSITE profilePS500906.1443797IPR017877Myb-like domain
SMARTSM005953.6E-1044136IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MATLSSSTQD LSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN  60
LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS  120
AWVLFKRMDA MEKGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNSVNT INNRSSSSFQ  180
GVVSNGGGGF RIRIPGMPVA ALPMAKPYSR MEDSGVENTS NFGPGKMFRG DEFVKKADMG  240
KRVAGEGVGP VREKKKEDPI GEMVAAIKML GDGFVRMERM KMDMARELEE MRMEMEMKRT  300
QMILESQQRI VEAFAQAQAR FGAYYALETD YSVELYRNWN LVKNFGTMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244646.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A1J6JAE80.0A0A1J6JAE8_NICAT; Trihelix transcription factor asil2
STRINGXP_009775826.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-58Trihelix family protein