PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02395g04006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 618aa    MW: 69468.7 Da    PI: 5.5549
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02395g04006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-172877756
                              --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++ eq+++L ++F+++++p++++r++L++++gL+ +q+k+WFqN+R++ k
  Niben101Scf02395g04006.1 28 HSVEQIQALDTFFKECPHPDENQRRQLSREIGLDPKQIKFWFQNKRTQTK 77
                              788*******************************************9987 PP
2START97.42.6e-312054006185
                               HHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                     START   6 aaqelvkkalaeepgWvkss.......esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                               a++e v + + +ep W ks          e +++ +  + +  +     ++e +++sg+v+m++ +l +++ld   ++ ++++  
  Niben101Scf02395g04006.1 205 ATDEIVELLQMNEPIWIKSQidgryfiNRESYEKIYPMPNQ--AyksaGRIESSKESGIVTMTAIELIQIFLDPV-RYRNMFPti 286
                               778999999***********988777655555555555533..2557789*************************.777777777 PP

                               ..EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                     START  78 ..kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                                 ka t+ev++++   g +qlm+ +l +lsplv  Rdf f+R++rql   +w+ vdvS d+ ++ + s +   + ++pSg++i++
  Niben101Scf02395g04006.1 287 vtKARTIEVVDTAnfgGSVQLMYEKLHMLSPLVGaRDFFFIRCCRQLHPTTWTMVDVSFDNLREIQ-SGGPSQSWKFPSGCVIQD 370
                               77***********9**************************************************99.88999999********** PP

                               ECTCEEEEEEEE-EE--SSXX.HHHHHHHH CS
                     START 157 ksnghskvtwvehvdlkgrlp.hwllrslv 185
                               ++ng+s vtw+ehv +++++    l+r lv
  Niben101Scf02395g04006.1 371 LGNGKSMVTWLEHVYVDDKTHtNRLYRDLV 400
                               **************9999887566777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-17973IPR009057Homeodomain-like
SuperFamilySSF466895.43E-161579IPR009057Homeodomain-like
PROSITE profilePS5007115.6291979IPR001356Homeobox domain
SMARTSM003891.4E-141983IPR001356Homeobox domain
CDDcd000868.42E-152777No hitNo description
PfamPF000463.6E-152777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084827.887191418IPR002913START domain
CDDcd088752.05E-72195402No hitNo description
SuperFamilySSF559611.28E-21197386No hitNo description
SMARTSM002342.7E-11200424IPR002913START domain
PfamPF018521.8E-26204400IPR002913START domain
Gene3DG3DSA:3.30.530.205.4E-7255383IPR023393START-like domain
SuperFamilySSF559613.16E-10412582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MADSGNEQIG ESSSSRKRSR RQKLCNRHSV EQIQALDTFF KECPHPDENQ RRQLSREIGL  60
DPKQIKFWFQ NKRTQTKALS DKADNNTLKT ENERFHCENM AMREALKNII CPHCDGPPPG  120
EEERRPPQHN VRSLSSSSDE SLVSQNIVGS PIEDPNNVRG NSTANIPPPL SLPLPPPPPP  180
PLFEENEEIR VDRERSIIFG TVISATDEIV ELLQMNEPIW IKSQIDGRYF INRESYEKIY  240
PMPNQAYKSA GRIESSKESG IVTMTAIELI QIFLDPVRYR NMFPTIVTKA RTIEVVDTAN  300
FGGSVQLMYE KLHMLSPLVG ARDFFFIRCC RQLHPTTWTM VDVSFDNLRE IQSGGPSQSW  360
KFPSGCVIQD LGNGKSMVTW LEHVYVDDKT HTNRLYRDLV MGDRLDFPTS SEMTNSGVRV  420
SFRKNEDISQ PKGLIVTAAS SLWLPLSFDT VFDFFKDDKT RTQWDVLTNG NAVGELARIP  480
TGFFPGNCIS IIQPYVPKEN NMLLLQETTI DPMGAFIIYA PIDLATVTSI INGVDTTQIP  540
ILPSGFIISP DGRHAVDRDN NEISQTGSLL TVAFQILVSA NTSTNSISKQ QNMEAVTTVH  600
TLLSSTVQKI KVALDCAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771801.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1U7W3L10.0A0A1U7W3L1_NICSY; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.12e-86homeodomain GLABROUS 8