PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02385g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 22099.2 Da PI: 9.789 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.5e-20 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+d++k+ G +W +I+r+ g++R++k+c++rw++yl Niben101Scf02385g00005.1 16 KGPWTEDEDEKLIDYIKKNGHTNWQLIPRKAGLKRCGKSCRLRWNNYL 63 79*********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.515 | 11 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 17 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.72E-23 | 17 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.40E-14 | 18 | 63 | No hit | No description |
PROSITE profile | PS50090 | 4.252 | 64 | 103 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.067 | 68 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 71 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGRYPCCKLD DYDLKKGPWT EDEDEKLIDY IKKNGHTNWQ LIPRKAGLKR CGKSCRLRWN 60 NYLRPDIKRG GFSHEEEEII INLHSVLGNK TDNEIKNFYN THLKKKLLKL GIDPQTHKPI 120 SDLNSLLNFS NQFTSNSNHF VSLASTRRLQ AHFTLLAKIQ QLINSNLFST TQGNFLSNPN 180 PPLFENPRFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-23 | 13 | 107 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019240410.1 | 1e-116 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | Q9SBF3 | 5e-59 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A1J6JR86 | 1e-115 | A0A1J6JR86_NICAT; Transcription factor myb39 | ||||
STRING | XP_009789695.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-63 | myb domain protein 9 |
Publications ? help Back to Top | |||
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