PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02375g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 353aa    MW: 39886.7 Da    PI: 6.6316
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02375g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.53.4e-062843083155
                               HHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  31 eeLAkklgLterqVkvWFqNrRake 55 
                                 LA+ +gL+++q+ +WF N+R ++
  Niben101Scf02375g06001.1 284 VALAETTGLDQKQINNWFINQRKRH 308
                               5799999***************885 PP
2ELK383.6e-13243264122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK++LlrKYsgyL+sLkqE+s
  Niben101Scf02375g06001.1 243 ELKNHLLRKYSGYLSSLKQELS 264
                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.0E-2199143IPR005540KNOX1
PfamPF037903.9E-23100142IPR005540KNOX1
SMARTSM012561.3E-25150201IPR005541KNOX2
PfamPF037911.7E-23154199IPR005541KNOX2
PROSITE profilePS5121311.296243263IPR005539ELK domain
PfamPF037892.4E-10243264IPR005539ELK domain
SMARTSM011883.5E-7243264IPR005539ELK domain
SMARTSM003890.0013265315IPR001356Homeobox domain
SuperFamilySSF466891.24E-9267323IPR009057Homeodomain-like
CDDcd000864.54E-7282312No hitNo description
PROSITE profilePS500719.556282311IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-13283314IPR009057Homeodomain-like
PfamPF059206.9E-9283307IPR008422Homeobox KN domain
PROSITE patternPS000270286309IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MENNYNQLGE NSAQRGNNFL YGGIPLLASP NSSIYGRSSG GGGDCYDQSQ AVVHPIVKTE  60
GGSTSHLHTY QYPSIICSGY HHQTVQNHHG SESSGGEVDA LKAKIIAHPQ YSNLLDAYMD  120
CQKVGAPPEV VAKLSAVRQE FEVRKRDSST DRNITKDPEL DQFMEAYYDM LVKYREELTR  180
PLHEAMDFMR KIETQLNMLG NGPVRIFNSE DKCEGVGSSE EEQDNIGGET EIPEIDPRAE  240
DRELKNHLLR KYSGYLSSLK QELSKKKKKG KLPKDARQKL LKKVALAETT GLDQKQINNW  300
FINQRKRHWK PSEDMQFMVM DGLHPQNAAA LYMEGHYMAE GHYMAEGPFR LGQ
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760089.10.0PREDICTED: homeotic protein knotted-1 isoform X1
RefseqXP_016442876.10.0PREDICTED: homeotic protein knotted-1-like isoform X1
SwissprotQ413301e-175KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A1S3XSE70.0A0A1S3XSE7_TOBAC; homeotic protein knotted-1-like isoform X1
TrEMBLA0A1U7VCR60.0A0A1U7VCR6_NICSY; homeotic protein knotted-1 isoform X1
STRINGXP_009760089.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-114KNOTTED-like from Arabidopsis thaliana