PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02369g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 176aa MW: 20748.9 Da PI: 10.5287 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50 | 5.2e-16 | 3 | 63 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql +L +l++k +p+ +e + + ++l +++ ++V++WFqN++a++++ Niben101Scf02369g00003.1 3 RTRWKPTPQQLVILHDLYRKgLTNPNSSEVQMIMSHLsmygKIQWKNVFYWFQNHKARDRQ 63 89*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 101 | 8.7e-33 | 2 | 64 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +rtRW Ptp+Q+ iL++ly++Gl +Pn++e+q i ++L+ yGki+ kNVfyWFQN+kaR+rqk Niben101Scf02369g00003.1 2 PRTRWKPTPQQLVILHDLYRKGLTNPNSSEVQMIMSHLSMYGKIQWKNVFYWFQNHKARDRQK 64 589***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.1E-5 | 1 | 68 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.637 | 1 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-7 | 2 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-10 | 2 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-13 | 3 | 63 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MPRTRWKPTP QQLVILHDLY RKGLTNPNSS EVQMIMSHLS MYGKIQWKNV FYWFQNHKAR 60 DRQKMRKQLL QKYPKDDPRQ LIINNKNPPS ASPSSSTTVS QLYSHSPPIF LHQVEATTEV 120 SPQMMNYLWG NRMMRMNDRD WILMTDKGSS NIVHCSNKVP LRTLELFPVE TTGFKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771344.1 | 1e-114 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1U7W9L6 | 1e-113 | A0A1U7W9L6_NICSY; WUSCHEL-related homeobox 3-like | ||||
STRING | XP_009771344.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 9e-29 | WOX family protein |