PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02369g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 176aa    MW: 20748.9 Da    PI: 10.5287
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02369g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox505.2e-16363257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r+R+++t++ql +L +l++k   +p+ +e + + ++l    +++ ++V++WFqN++a++++
  Niben101Scf02369g00003.1  3 RTRWKPTPQQLVILHDLYRKgLTNPNSSEVQMIMSHLsmygKIQWKNVFYWFQNHKARDRQ 63
                              89*****************99*************************************996 PP

2Wus_type_Homeobox1018.7e-33264264
         Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                              +rtRW Ptp+Q+ iL++ly++Gl +Pn++e+q i ++L+ yGki+ kNVfyWFQN+kaR+rqk
  Niben101Scf02369g00003.1  2 PRTRWKPTPQQLVILHDLYRKGLTNPNSSEVQMIMSHLSMYGKIQWKNVFYWFQNHKARDRQK 64
                              589***********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.1E-5168IPR001356Homeobox domain
PROSITE profilePS500719.637164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-7268IPR009057Homeodomain-like
SuperFamilySSF466891.97E-10269IPR009057Homeodomain-like
PfamPF000461.2E-13363IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MPRTRWKPTP QQLVILHDLY RKGLTNPNSS EVQMIMSHLS MYGKIQWKNV FYWFQNHKAR  60
DRQKMRKQLL QKYPKDDPRQ LIINNKNPPS ASPSSSTTVS QLYSHSPPIF LHQVEATTEV  120
SPQMMNYLWG NRMMRMNDRD WILMTDKGSS NIVHCSNKVP LRTLELFPVE TTGFKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771344.11e-114PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U7W9L61e-113A0A1U7W9L6_NICSY; WUSCHEL-related homeobox 3-like
STRINGXP_009771344.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.19e-29WOX family protein