PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02366g04011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25590.1 Da    PI: 5.9291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02366g04011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-1856109457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               ++++++eq++ Le  Fe+++++ +e++ +LA++lgL   qV vWFqNrRa++k+
  Niben101Scf02366g04011.1  56 KRKLSEEQVNLLELSFEEEHKLETERKDKLASELGLHPHQVAVWFQNRRARYKN 109
                               45899***********************************************95 PP
2HD-ZIP_I/II115.43.4e-3755145292
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE sFeee+kLe+erK +la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk+++d++  e++rLe+ev  
  Niben101Scf02366g04011.1  55 RKRKLSEEQVNLLELSFEEEHKLETERKDKLASELGLHPHQVAVWFQNRRARYKNKKLEEEYSKLKTEHDTVIVEKCRLENEVIM 139
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelk 92 
                               ++e+l 
  Niben101Scf02366g04011.1 140 MKEQLC 145
                               999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.64950110IPR001356Homeobox domain
SMARTSM003895.4E-1753114IPR001356Homeobox domain
CDDcd000867.76E-1555111No hitNo description
SuperFamilySSF466897.59E-1755118IPR009057Homeodomain-like
PfamPF000461.8E-1556109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1957117IPR009057Homeodomain-like
PRINTSPR000312.2E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000312.2E-590106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKSSMTHQID DQMILISQYY PHIFNQLVSE PGEAKPRRRR KKNKGEGSSS SGVMRKRKLS  60
EEQVNLLELS FEEEHKLETE RKDKLASELG LHPHQVAVWF QNRRARYKNK KLEEEYSKLK  120
TEHDTVIVEK CRLENEVIMM KEQLCEAENE IQKLQLERNC DGVSSNSPIS TSSFTMDQPP  180
FLGEFGMEGM LMDNLFFVAE NTYNYHEVLE WVNPIFNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RKKNKGEGSSSSGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605338.11e-128PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232087e-70ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S4DI661e-126A0A1S4DI66_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009605338.11e-128(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-62homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]