PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02361g07001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 654aa MW: 72133.9 Da PI: 7.9977

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02361g07001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.9	3.3e-29	62	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ ++ + +t+++fdql Niben101Scf02361g07001.1 62 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQL 144 8******************************************************************96..66678****9 PP trihelix 86 e 86 Niben101Scf02361g07001.1 145 A 145 6 PP
2	trihelix	104.1	1e-32	460	545	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+k+e+ aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql Niben101Scf02361g07001.1 460 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQL 543 8*******************************************************************8.99********* PP trihelix 86 ea 87 ea Niben101Scf02361g07001.1 544 EA 545 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.12	55	119	IPR017877	Myb-like domain
SMART	SM00717	0.0023	59	121	IPR001005	SANT/Myb domain
Pfam	PF13837	2.4E-18	61	146	No hit	No description
CDD	cd12203	1.79E-24	61	126	No hit	No description
SMART	SM00717	2.6E-5	457	519	IPR001005	SANT/Myb domain
Pfam	PF13837	1.2E-22	459	546	No hit	No description
CDD	cd12203	1.09E-28	459	524	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.3E-5	459	516	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.689	459	517	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MLGVSSGLMT NTSCGGGAAS ISAPPPQEAP ESGGSSEGGG GGDVAAAGGF SEEGERNSGG 60 NRWPRQETLA LLRIRSEMDV VFRDSSLKGP LWEEVSRKLA DLGYHRSAKK CKEKFENVYK 120 YHRRTKDGRA SKADGKTYRF FDQLAAFENS TSHNSLPPPP LAATPLTMAM PMPVRPNPPI 180 PLSQSMAPPA QNTFVVSQNN VVTAASAVNH PLNVSSLPLS QPPPPPTQPI ITTVNQMNRP 240 QGNTSSLLPN STSSSSTSSD EDIQKRHGKK RKWKNFFERL TKDVIEKQEE LQKKFLETLE 300 KRETERMVRE ETWRVQEMTR MNREHDLLVQ ERSMAAAKDA TIIAFLQKIT EQKNTPIPNI 360 TNASLAQMQF QLSEKSPSGP PHSQPQKQTQ QLTPATPPPP ATASATASAT TPAPAIAVSL 420 PMPIHAQVQT QVPSLPVAKT FEAPKTDNGG ENLSPASSSR WPKEEIEALI RLRTSLDLKY 480 QDNGPKGPLW EEISAGMRKL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF 540 HQLEALYKEK AKNEVVPNTG TGFGLKPENN NPMVPIMAEP EQQWPFRSNQ PQQQQQQQGI 600 MSNIIQDHDN ESDSMEEDDY DDDEDEGNAY EIVTNKQPSS MAAATVTAAA TTAV

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MLGVSSGLMT NTSCGGGAAS ISAPPPQEAP ESGGSSEGGG GGDVAAAGGF SEEGERNSGG  60
NRWPRQETLA LLRIRSEMDV VFRDSSLKGP LWEEVSRKLA DLGYHRSAKK CKEKFENVYK  120
YHRRTKDGRA SKADGKTYRF FDQLAAFENS TSHNSLPPPP LAATPLTMAM PMPVRPNPPI  180
PLSQSMAPPA QNTFVVSQNN VVTAASAVNH PLNVSSLPLS QPPPPPTQPI ITTVNQMNRP  240
QGNTSSLLPN STSSSSTSSD EDIQKRHGKK RKWKNFFERL TKDVIEKQEE LQKKFLETLE  300
KRETERMVRE ETWRVQEMTR MNREHDLLVQ ERSMAAAKDA TIIAFLQKIT EQKNTPIPNI  360
TNASLAQMQF QLSEKSPSGP PHSQPQKQTQ QLTPATPPPP ATASATASAT TPAPAIAVSL  420
PMPIHAQVQT QVPSLPVAKT FEAPKTDNGG ENLSPASSSR WPKEEIEALI RLRTSLDLKY  480
QDNGPKGPLW EEISAGMRKL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF  540
HQLEALYKEK AKNEVVPNTG TGFGLKPENN NPMVPIMAEP EQQWPFRSNQ PQQQQQQQGI  600
MSNIIQDHDN ESDSMEEDDY DDDEDEGNAY EIVTNKQPSS MAAATVTAAA TTAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	263	271	QKRHGKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016514564.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1S4DN33	0.0	A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like
STRING	XP_009594163.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-62	Trihelix family protein