PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02354g12006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 1079aa    MW: 119130 Da    PI: 4.9693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02354g12006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-1873119148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WTteEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Niben101Scf02354g12006.1  73 KGQWTTEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 119
                               799****************************9.************986 PP
2Myb_DNA-binding64.91.6e-20125171148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Niben101Scf02354g12006.1 125 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 171
                               79******************************.*************97 PP
3Myb_DNA-binding49.78.3e-16177219145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               + +WT+eE++ l++a++ +G++ W+   ++++ gRt++ +k++w+
  Niben101Scf02354g12006.1 177 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNAIKNHWN 219
                               579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.72368119IPR017930Myb domain
SuperFamilySSF466891.36E-1569125IPR009057Homeodomain-like
SMARTSM007175.3E-1572121IPR001005SANT/Myb domain
PfamPF002499.5E-1673119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2274131IPR009057Homeodomain-like
CDDcd001678.25E-1476119No hitNo description
PROSITE profilePS5129434.007120175IPR017930Myb domain
SuperFamilySSF466896.74E-32122218IPR009057Homeodomain-like
SMARTSM007175.3E-19124173IPR001005SANT/Myb domain
PfamPF002492.2E-18125171IPR001005SANT/Myb domain
CDDcd001678.73E-17127171No hitNo description
Gene3DG3DSA:1.10.10.601.4E-27132179IPR009057Homeodomain-like
PROSITE profilePS5129419.653176226IPR017930Myb domain
SMARTSM007176.3E-15176224IPR001005SANT/Myb domain
PfamPF002494.1E-14177220IPR001005SANT/Myb domain
CDDcd001671.77E-11179219No hitNo description
Gene3DG3DSA:1.10.10.601.9E-21180226IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1079 aa     Download sequence    Send to blast
MCFFFITPLV VLGFLKLSSR IINLWVVGYA DLPLCQTTME TERISTPSDG TSSSQRVRPL  60
HGRTSGPTRR STKGQWTTEE DEILRKAVQR FKGKNWKKIA ECFKDRTDVQ CLHRWQKVLN  120
PELVKGPWSK EEDEVIVELV KKYGPKKWST IAQHLPGRIG KQCRERWHNH LNPGINKEAW  180
TQEEELTLIR AHQIYGNKWA ELTKYLPGRT DNAIKNHWNS SVKKKLDSYL ASGLLAQFPA  240
LPNVNRQSQS IPSSTKLQQS SEDDSVRKEG TEMEDASECS QGSNLAGCSQ STSDMGTTFV  300
HAREEGKLLE DSNYRKDPSS SSAPCSEYHT PAFEDITFSV AEVPSELDES KLLEHNFSHD  360
WAASMGKEWQ FNLDDIPNIS PLELMQDSSG LFMQCLTGNG NHEMVTFPQQ NAVKYETTNV  420
GSMVGLDKPN EMFTSVEGCG MVYPEAGIPQ YIPSETGMNG ADETADSLIC QSSNYQISEG  480
GNMSIENCCN PLCSHVMGTS SGQPFSIPSQ FSSEQSSLMF GTAANHFHNL SQGDPAQESH  540
TSNSDGFIYP FESGTPCDKI MDDPLLEEQL DQTKDSLQLV SVNDFHSTSS NIIQTCQLVN  600
ENSSILEEQK DGGALYYEPP RFPSLDIPFF SCDLIQSGAD AQQEYSPLGI CQLMMTSVNC  660
LTPFRLWDSP SRDGSPDAVL RSAAKTFTST PSILKKRQRD LVSPLSEKRC EKKLGSDLRQ  720
ESFSDLSKDF SRLDVMFDEA ANEKATKSSL TTDQTLELQA SSEDKENINP TDDGTKEEDK  780
VRNGLSSERQ LDGGEVHYKE KLTWKGTKGR ANSAIGKIKQ PSGVLVELNA SDLFFSPDRF  840
GAKSGRTTNL SSKALGNQYA RRLEAASNQG SASSSFETSC ISVICSPRIR GKKDGSSFVI  900
TTSMQSAPAQ TAFDNSAETS GNGVGAETVS ISGETPYKRS IESPSAWKSP WFINSFLSSP  960
RLDNELNFED LVLFMSPGDR SYDAIGLMKQ LSEQTAGAFA DAQEVLGGET PESILQGRNS  1020
KNQKADENHS LLPANVMSER RTLDFSECGS PGKGKKTDNF CTSNNSFSSP SSYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-69732266159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-69732266159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508080.10.0PREDICTED: myb-related protein 3R-1-like
TrEMBLA0A1S4D3R50.0A0A1S4D3R5_TOBAC; myb-related protein 3R-1-like
STRINGXP_009782666.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein