PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02348g08004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 352aa MW: 39758.8 Da PI: 8.0651 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ + q+G+g +W + + ++g++R++k+c++rw++yl Niben101Scf02348g08004.1 14 KGPWSPEEDAKLKSHIDQHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.67 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.02E-18 | 11 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.56E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 4.658 | 63 | 99 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.8 | 67 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-10 | 70 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MGRAPCCDKN SVKKGPWSPE EDAKLKSHID QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FSQEEDNIIL SLYISIGSRT DNDIKNYWNT KLKKKLFGKR KNLRGKSQKQ 120 GSRKGRDQIN SSMDSHNNID TNPSWSEFPI LQPIPYSNDE PRYSNDHTSI RKLLMKLGGK 180 FCDDDDKPMN GALNPQYDPM DNSLMHPIYY DSINLISAAP IGVTNTSPFT NSHEYNVDGK 240 AVCWADTDTE KRKLGERMGS DTSVALALNN GCNSTTELEN MVYTNPQKLD DLEMLYEDML 300 NNKPSTTLGG SLDWERMNNL VFPFPPLVVS NNEGHHPATL LGALNELRYH RD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-14 | 14 | 106 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785472.1 | 0.0 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | A0A1U7WZZ4 | 0.0 | A0A1U7WZZ4_NICSY; transcription factor RAX1-like | ||||
STRING | XP_009785472.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-59 | myb domain protein 36 |