PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02336g02011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 400aa MW: 46700.2 Da PI: 9.0705

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02336g02011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.1	3.3e-12	124	148	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prlrWtpeLH++Fv+a+e+LGG+ek Niben101Scf02336g02011.1 124 PRLRWTPELHRSFVHAIERLGGQEK 148 8**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-10	120	149	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MIHIGLFLSL KTSLPNLLRK LEVAMTENSV KQANEEMMTN TMEYLMEKTS SDSSSQRKMV 60 SFIDLNEDNK EESDEEEEEV IEISVENSSE KTRDEGNSEN NNNSSGNGRV EKKNVRHYVR 120 SKMPRLRWTP ELHRSFVHAI ERLGGQEKKL ITYLIQMYRS KKLDESGQGR NKAMQGRSFF 180 YGNVGQRYNP LQDFKMKNGA IVLARNFNYD HDHGHFRNSF SRPPCQAKDI FSRYLQWSSN 240 QGSLLNTTRE KLWTPRQFQK NGGHEIGPVR SSQFLEEKRG PPSEFIANQL EEKIADFSNI 300 YSAKKSQYLL QQNVTQPYSK WNCRYNTLEQ NFETPTKLEM KEDKSFMTEK DWLPDLQLRL 360 SRSTENKNEK NTHHSKRMDH QTDINTMLSL SLPNYSSSAT

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MIHIGLFLSL KTSLPNLLRK LEVAMTENSV KQANEEMMTN TMEYLMEKTS SDSSSQRKMV  60
SFIDLNEDNK EESDEEEEEV IEISVENSSE KTRDEGNSEN NNNSSGNGRV EKKNVRHYVR  120
SKMPRLRWTP ELHRSFVHAI ERLGGQEKKL ITYLIQMYRS KKLDESGQGR NKAMQGRSFF  180
YGNVGQRYNP LQDFKMKNGA IVLARNFNYD HDHGHFRNSF SRPPCQAKDI FSRYLQWSSN  240
QGSLLNTTRE KLWTPRQFQK NGGHEIGPVR SSQFLEEKRG PPSEFIANQL EEKIADFSNI  300
YSAKKSQYLL QQNVTQPYSK WNCRYNTLEQ NFETPTKLEM KEDKSFMTEK DWLPDLQLRL  360
SRSTENKNEK NTHHSKRMDH QTDINTMLSL SLPNYSSSAT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246921.1	0.0	PREDICTED: uncharacterized protein LOC109226576 isoform X1
TrEMBL	A0A1U7YGB5	0.0	A0A1U7YGB5_NICSY; uncharacterized protein LOC104247786
STRING	XP_009802187.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-17	G2-like family protein