PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02315g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 821aa    MW: 91016 Da    PI: 6.3385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02315g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-0885127347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Niben101Scf02315g00012.1  85 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 127
                               6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.08E-1080132IPR009057Homeodomain-like
PROSITE profilePS5129313.41381132IPR017884SANT domain
SMARTSM007173.2E-682130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-584130IPR009057Homeodomain-like
PfamPF002493.4E-685127IPR001005SANT/Myb domain
CDDcd001678.98E-685128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MQMEPQVSLE CDRCLHPETL MCKDGVSDDT QHPAAARPVI PSEDHPASQL SVLIHDHAVT  60
QQVSSSQDQV MLQKPAKRQT RQWAAWTRQE EESFFSALRQ VGKNFEKITS RVQSKNKDQV  120
RHYYYRLVRR MNKLLGPELC LDAKNSKDTN AAMLRWWSLL EKSSCKASKL HLKPRRFKMF  180
IETLESQLLK DRKKNVRRRP SQGESSSTVA ASLSSQSRVS TNDSRTVKVV LLDNQDVQKF  240
GSGKGSSLKR HVTMGVNRSN TKVDSSPVKN ARYRRKIGSV STAAYKRWEK AAIAGVSLVA  300
DAAEHLERAT IDKDVAIVQN SQGINGFEHV GKDVHSLPTL SQNLLNETNL QSCMKLKLQL  360
FPVDEVTRRA LEMDNHNPYL ELTLSNRKKM SSVLEHLNRK WGISSIATGE LVLLPYHVQM  420
ENLVQSLRWT KDTTLSAADV YNLIGSPPVF RLRYGWFPNS ELGTFQAPLS STTPFTQNTN  480
TNITEEMNAE VLASSHGKLV RFFKEPLVSN PRMTVTSSST GLSGEPNLQA SMDLNTYNSD  540
HNETLPSHRR ENGAISREKQ VEMDDVQGGK TSALSAGDWE DSLTNISVGD LLSDAPDDEE  600
TDCIESTLPG SSHFLQQMPF SCDSFDAAIA AHIYKHQSKA ESQMALPPQA SSIWNAEDTC  660
DAFAFQKDVA CRLYNSSSNV GAENCEHISQ SSSLLLDAGV KDLPGKMEPL TDEPAHEDPV  720
DECQSDAEAL GSSTKDLSGL SDIYWPDSLG PLELDAPSCR YHSENLILSD NSLGGLNRLI  780
ASSLDAFQNC SFFGLDKKEP GSTVEAVETT SLADYKIGAK V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610182.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_009610183.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_018628864.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1S3Z8420.0A0A1S3Z842_TOBAC; TSL-kinase interacting protein 1-like isoform X1
STRINGXP_009610182.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86401719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1