PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02286g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 765aa    MW: 83508.8 Da    PI: 7.1031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02286g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.6e-07247267526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f + G C  Gd+C +aHg
  Niben101Scf02286g01005.1 247 PCPEFKK-GACAKGDSCEYAHG 267
                               8******.*************9 PP
2zf-CCCH21.44.6e-07329349526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f + G C  Gd+C +aHg
  Niben101Scf02286g01005.1 329 PCPEFKK-GACAKGDSCEYAHG 349
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.23E-1514137IPR020683Ankyrin repeat-containing domain
PfamPF127961.4E-1051122IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.2955130IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.875579IPR002110Ankyrin repeat
SMARTSM002489.0E-45585IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.8E-1756137IPR020683Ankyrin repeat-containing domain
CDDcd002044.23E-1657137No hitNo description
PROSITE profilePS5008812.66390125IPR002110Ankyrin repeat
SMARTSM002481.5E-490122IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.102.1E-4239268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019242269IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5242268IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4247267IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.634277301IPR000571Zinc finger, CCCH-type
SMARTSM0035637277300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4322351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019324351IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5324350IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5329349IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.634359383IPR000571Zinc finger, CCCH-type
SMARTSM0035637359382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDKKDGVSKN CSKLLELSAS DDLAGFICEV EKGCGIDELS SWYGRKFGSK EMGLEERTPL  60
MIASMYGSIE ILRFIIETGK VDVNRACGSD GATALHCAAA GGSESSIEVV KILVDASADV  120
NACDSSGNRP CDVIASYPKC LRNSKRKSLE LLLNGSLAEL AELEEEEGKA VIQPTKEGSE  180
KKEYPIDTSL PDINDGIYGS DDFRMYCFKV KPCSRAYSHD WTECPFVHPG ENARRRDPRK  240
YNYTCVPCPE FKKGACAKGD SCEYAHGVFE SWLHPAQYRT RLCKDETGCS RKVCFFAHKH  300
EELRPLYAST GSAIPSPKAX KEDNYTCVPC PEFKKGACAK GDSCEYAHGV FESWLHPAQY  360
RTRLCKDETG CSRKVCFFAH KHEELRPLYA STGSAIPSPK ATPVSSMDMS TPSPLALSSS  420
SMMLPTTTTS TPPMSPAATC SSPMGGNMWP GKVNLTPPAL QLPGSRLKTS LNARDLDLDM  480
EMLGLESIRT QQQLRQQLID EMAGLSSPSY WKNDNRMGDL KPTNLDDVFG SVDSQLLSQL  540
QGLSPRMTSN TSSQLYSPSV SHMQGLSPKV TSNTSQLQSP TGLQMRQNMN QFQGSYSIMS  600
QSSSPLRKPS TYGFDSSAAV AAAVMNSRSA AFAKQRSQSF IDRSGIGHRS GPNGVANSPP  660
LMSSNISDWG SPTGKLEWGF NSEDTNKLKR SQSFGFRGGN AAPTRSPIAP SQVNEPDVSW  720
VHSLVKDVSS TGTGLYSSEQ KHGSIRDTIP PWLEQMYIDQ ERIVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245330.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
TrEMBLA0A1J6IDP80.0A0A1J6IDP8_NICAT; Zinc finger ccch domain-containing protein 29
STRINGXP_009805065.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-134C3H family protein