PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02268g07002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 281aa MW: 31131.3 Da PI: 6.1123

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02268g07002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.2e-18	18	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Niben101Scf02268g07002.1 18 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 63 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-25	12	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.645	13	67	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-15	13	72	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-17	17	65	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-17	18	63	IPR001005	SANT/Myb domain
CDD	cd00167	3.19E-13	20	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGRSPCCDES GLKKDIKRGK FSQEEEQTIL NLHAILGNKW SAIATHLPGR TDNEIKNFWN 60 THLKKKLIQM GYDPMTHRPR TDIFNSLPHL IALANLKELL VEQHNHSSFE GQAMRLQSEM 120 ATLQYLHYLL QPPPTTPNME AYNLLNSMKD GQFIGTNHLE NSLNNITSML PSSSLQAIQD 180 SIPFSHLPEL QAAVPCCSVQ LTSLNNKENM VQLSVLSQGD QNMTPTSSPW PPASLSPSPR 240 PPAAAATNDI NIVGDSNCST SLFGGAWPEI LLEDSLFHDI P

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778686.1	0.0	PREDICTED: transcription factor MYB39-like
Refseq	XP_016473646.1	0.0	PREDICTED: transcription factor MYB39-like
Swissprot	Q9S9Z2	1e-52	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1S4AAN7	1e-180	A0A1S4AAN7_TOBAC; transcription factor MYB39-like
TrEMBL	A0A1U7WN21	1e-180	A0A1U7WN21_NICSY; transcription factor MYB39-like
STRING	XP_009778686.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	9e-53	myb domain protein 93

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]