PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02250g03015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 302aa    MW: 34607.4 Da    PI: 9.7757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02250g03015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-18105151148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +lv++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Niben101Scf02250g03015.1 105 KGQWTDEEDRKLVRLVKQFGERKWAQIAEKMD-ARAGKQCRERWHNHL 151
                               799*****************************.*************97 PP
2Myb_DNA-binding57.92.4e-18157199145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               ++ W++eE++llv+ +kqlG++ W+ Ia++++ gRt++++k++w+
  Niben101Scf02250g03015.1 157 KDTWSEEEELLLVETHKQLGNK-WAEIAKRIP-GRTENSIKNHWN 199
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.016100155IPR017930Myb domain
SuperFamilySSF466892.95E-29104198IPR009057Homeodomain-like
SMARTSM007171.6E-14104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-26106158IPR009057Homeodomain-like
CDDcd001677.21E-14108151No hitNo description
PfamPF139211.1E-19108167No hitNo description
PROSITE profilePS5129419.368156206IPR017930Myb domain
SMARTSM007178.4E-16156204IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-21159204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESGSVFRPY QNLPKPRPPL TAIDRFLLSH ENYFCPFSGA NASSSSHANG ISWPKSLPDP  60
RFIEGFFLNE QENGLIEDAK TAQENKKESW KKAKEGNSTK NYLVKGQWTD EEDRKLVRLV  120
KQFGERKWAQ IAEKMDARAG KQCRERWHNH LRPDIKKDTW SEEEELLLVE THKQLGNKWA  180
EIAKRIPGRT ENSIKNHWNA TKRRMNSRRN KKRKNNQQDG GQKERSNVLQ DYIRSVYFTD  240
DSFPTASSFH GGGGGSGGGS STATTVTPRN STPPYSDDDA PSLITHQTCD EEMNFMQNLF  300
RN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-421032045106B-MYB
1gv2_A4e-421032042103MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-421032042103C-Myb DNA-Binding Domain
1msf_C3e-421032042103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201212KRRMNSRRNKKR
2207213RRNKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592355.11e-178PREDICTED: myb-like protein Q
TrEMBLA0A314KYM71e-177A0A314KYM7_NICAT; Transcription factor myb98
STRINGXP_009592355.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-64myb domain protein 119