PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02250g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 309aa    MW: 35137.2 Da    PI: 9.2505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02250g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.7e-082468345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+ E + + +a +++ ++   +W ++a++++ g+t  +++  + 
  Niben101Scf02250g00006.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68
                              8********************************.******998886 PP

2Myb_DNA-binding45.12.4e-14137181347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Niben101Scf02250g00006.1 137 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 181
                               7*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3982073IPR017884SANT domain
SMARTSM007175.3E-102173IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-112378IPR009057Homeodomain-like
CDDcd001672.41E-72470No hitNo description
PfamPF002495.8E-72469IPR001005SANT/Myb domain
PROSITE profilePS5129419.663130186IPR017930Myb domain
SuperFamilySSF466897.33E-17131185IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-17133185IPR006447Myb domain, plants
SMARTSM007172.9E-12134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-12135181IPR009057Homeodomain-like
CDDcd001673.27E-11137182No hitNo description
PfamPF002491.0E-12137181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEILSPAPYL SNSSWFLDEE KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKTV  60
VDVIRQYKEL EDDVSRIEAG LITIPGYTTT TSSSSPFTLE WGNSHSSFDG YKQSYVVGGK  120
RSLSNRPPEQ ERKKGIPWTE EEHKLFLMGL KKYGKGDWRN ISRNFVITRT PTQVASHAQK  180
YFIRQLSGGK DKRRASIHDI TTINLNDNQT PSPDHQKPTP IDQSTVISQQ PKSADNAMHK  240
MPFQWSQVNN GFNYAEGSLF MSPPYGGNSY GDTKMQSQSL QQRAAMREPY FGSQSMNFQL  300
QSAQPYYHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1625901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603384.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_009603385.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016432478.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-142DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1S3WXT50.0A0A1S3WXT5_TOBAC; transcription factor DIVARICATA-like
STRINGXP_009603384.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-101Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]