PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02249g05012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 356aa    MW: 39672.9 Da    PI: 6.4402
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02249g05012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind28.25.1e-091491281
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT..TEE.E---SSBTTTT....XTTSEEE CS
              HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY..gFk.kvkdeekksks....kekiweF 81
                              Fl k+y++++d +++++++  e+           f++   +kyFkh+nf+S vRQLn+Y  gF  k+ +++++ ++     +k   F
  Niben101Scf02249g05012.1 14 FLCKTYDMVDDLSMDSVLRRLER--------AGVFER-YFAKYFKHNNFSSSVRQLNTYspGFIaKLIHQQNEGNRripgMKKKRRF 91
                              88888888888888888877666........445565.7788*****************6667413334443333344442444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.0E-8866IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-7968IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-610101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-51489IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEAIHEIGNS PPPFLCKTYD MVDDLSMDSV LRRLERAGVF ERYFAKYFKH NNFSSSVRQL  60
NTYSPGFIAK LIHQQNEGNR RIPGMKKKRR FPNQEEEIYA SKPVSTMHDR QIVCYQPLMN  120
EAAKALLQKI LKTNASGRLE TKVKNTNGFL TNHGHAFKNT LDSTGICSRI SGVTLPQLPT  180
SSQSHLTPDS GFPFNSNLSA IPEIQYSPSL VPGEAKVPHF AGLNALNFQT DHVLPEVSEG  240
YGINTPDNFG ITNLKRLGTG NLPDIDRMQV IVDSVTSVVP DRFSTDTDID IFLDEMSKLP  300
GINDIFWDQI LSASPLTGDK HEIGSLALED GLAKEEDVPG IQESAFDKKK HMSYLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589KKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757456.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757457.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757458.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757460.10.0PREDICTED: heat stress transcription factor A-1-like
RefseqXP_009757461.10.0PREDICTED: heat stress transcription factor A-1-like
TrEMBLA0A1U7UMQ40.0A0A1U7UMQ4_NICSY; heat stress transcription factor A-1-like
STRINGXP_009757456.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.22e-22heat shock factor 3