PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02242g03012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 483aa    MW: 53991.2 Da    PI: 6.0546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02242g03012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-21263312255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a++k++g
  Niben101Scf02242g03012.1 263 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 312
                               7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.673263320IPR001471AP2/ERF domain
PfamPF008476.1E-14263312IPR001471AP2/ERF domain
SMARTSM003803.6E-39263326IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23263321IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-33263321IPR001471AP2/ERF domain
PRINTSPR003679.7E-12264275IPR001471AP2/ERF domain
CDDcd000181.13E-15271322No hitNo description
PRINTSPR003679.7E-12286302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSLMVSALTH VVAGEDRLNH QILTDENVAT ENNFGSGFSS VSWGVGEKRG REQQQSSQQF  60
LHGSSGITSS VYIVNFGVSA YWRFLPSRSI LLVEVDYFIC IYKVANSRDK IYSRRRSHED  120
RDRDDNYNVL ESMFSGNINR EEEMSLMVSA LTHVVAGEDR LNHQILTDEN VATENNFGSG  180
FSSVSWGVGE KRGREQQQSS QQFLHGSSGI TSSGGEGTSI RTITSSTPTT EATFIYTCTN  240
DHQNSSSDQS SGGDNNNDQA RRRYRGVRQR PWGKWAAEIR DPYKATRVWL GTFDTAEAAA  300
RAYDEAALKF RGSKAKLNFP ENVKLLPSPL FSDSPNTLYS VSSSPDPILH TSLYRPNFIE  360
YPLRDDEPVV HTSQYCSNFI ERPRTDEPIL HTAHNQALNT SITDLNAQFF TNDHEFHRLH  420
LPYLPSMFLS PIQTQVHIQP DASQSESVTE TLAPPLSQGS GRDFQTASNW SNSVYNHPSS  480
SSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23262323163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589948.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1S4DFC30.0A0A1S4DFC3_TOBAC; ethylene-responsive transcription factor ABR1-like
STRINGXP_009589948.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-21ERF family protein