PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02239g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 294aa    MW: 32679.9 Da    PI: 8.8689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02239g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13187232655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Niben101Scf02239g02007.1 187 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 232
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16184244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-12185236No hitNo description
Gene3DG3DSA:4.10.280.106.1E-16186243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQRGSGGAGG VGGGLSRFRS APATWLEALL ESDTENEVVL NPSSPILHSP NKPPPHPSTT  60
QQQLPELVKP ETRFAGDPGL FESGSSSNFL RQQSSPAEFL SHINSDGYFS SYGIPSSLNY  120
ISQPIKRPRE DDSESSPRKL SNHLKGEPSG QLRGSGGSLD AEMEKLMDDL VPCKVRAKRG  180
CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LEEAVEYVKF LQKQIQASHE  240
YTQILMAIHK SLDTAESKIS FSFNIKSRSY SVFWRSCIML YKVVSICLIS NFFS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788006.11e-160PREDICTED: transcription factor bHLH80-like isoform X1
RefseqXP_016453059.11e-160PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-60BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A1S3YLE91e-158A0A1S3YLE9_TOBAC; transcription factor bHLH80-like
TrEMBLA0A1U7XED01e-158A0A1U7XED0_NICSY; transcription factor bHLH80-like isoform X1
STRINGXP_009788006.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-51bHLH family protein