PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02222g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 497aa    MW: 55176.1 Da    PI: 10.4073
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02222g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-111361254
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                              +++G++ +k +g+++A Irdp     + kr++lg+f  a+eA ka+ a   ++e
  Niben101Scf02222g00019.1 13 QFPGIWKRK-NGKYAAVIRDPI----KkKRVWLGTFSVAQEASKAYLAKQCEFE 61
                              789**8887.8*********72....35******************99988876 PP
2AP236.41.3e-11206245346
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaa 46 
                               ++GVr +k +g+++A Irdp     + kr++lg+f +a+eA +a+
  Niben101Scf02222g00019.1 206 FTGVRKRK-NGKYAAVIRDPI----KkKRVWLGTFSSAQEASEAY 245
                               89***999.8*********72....35*****************9 PP
3AP225.14.3e-083133481451
                       AP2  14 r.WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                               r + + Ir      ++ ++f+lg++gtaeeA +a+   + 
  Niben101Scf02222g00019.1 313 RnYTSDIRN----SISkRKFWLGTYGTAEEASQAYQSKKF 348
                               345655555....2335*****************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-121253No hitNo description
PROSITE profilePS5103212.4971376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-131357IPR001471AP2/ERF domain
SMARTSM003808.0E-61372IPR001471AP2/ERF domain
PfamPF008474.4E-51462IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-101460IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-5123147IPR001471AP2/ERF domain
CDDcd000181.57E-14204245No hitNo description
PROSITE profilePS5103213.775205245IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-11205249IPR016177DNA-binding domain
SMARTSM003804.5E-9205274IPR001471AP2/ERF domain
PRINTSPR003677.1E-5206217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-15206245IPR001471AP2/ERF domain
PfamPF008475.3E-5206245IPR001471AP2/ERF domain
PRINTSPR003677.1E-5228244IPR001471AP2/ERF domain
PROSITE profilePS510329.414298367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-9307351IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-6307351IPR016177DNA-binding domain
PfamPF008473.2E-4318345IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDSIVFDLHD ETQFPGIWKR KNGKYAAVIR DPIKKKRVWL GTFSVAQEAS KAYLAKQCEF  60
EKLNQGKQGG ESKNCAQLQP DSSGAEISPL ANDQSVNTAD LSRNARSNSP GTISTGVRKR  120
RNDPIKKKRV WLGTFSSVQE ASKAYFSKKC EFEKLNQGKQ GGESKSFEQL QPDSSGGELT  180
PVANDQSLNT AGVSRNARSN SFETLFTGVR KRKNGKYAAV IRDPIKKKRV WLGTFSSAQE  240
ASEAYFSKKC GFVKLNQGKQ GGESKNCEQL QLDSSGGELS PLANDQSLNT AGKWKKQFSR  300
NITLHWVHKR NSRNYTSDIR NSISKRKFWL GTYGTAEEAS QAYQSKKFEF QKQLKPKQQC  360
SKLMSSAREK QDGKMKLVNV KLGNEAVNRE GLQPESAGGS SSSEIDVPIS NLLDGGSDHG  420
SDFLEIIHSM RFRKRKSGKY TSEITNPISI TKNSLGALGP IEEVFHANPH KKLDSQTSEK  480
VELQSNLQLI LLQGRSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118128KRRNDPIKKKR
2210228KRKNGKYAAVIRDPIKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231532.11e-151PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
RefseqXP_019231537.11e-151PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
TrEMBLA0A1J6J1D50.0A0A1J6J1D5_NICAT; Ethylene-responsive transcription factor erf118
STRINGXP_009771233.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-13ERF family protein