PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02219g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 366aa    MW: 40100.8 Da    PI: 5.9188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02219g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20186235255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+g
  Niben101Scf02219g02002.1 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 235
                               59******9.**********965...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-32185245No hitNo description
SMARTSM003804.9E-37186249IPR001471AP2/ERF domain
PROSITE profilePS5103222.721186243IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-23186244IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-32186244IPR001471AP2/ERF domain
PRINTSPR003673.6E-11187198IPR001471AP2/ERF domain
PfamPF008476.8E-14187235IPR001471AP2/ERF domain
PRINTSPR003673.6E-11209225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAAAMEFWNS TSVDVHSTPE PIITSGGELM EALEPFMKSA SSSPSSNFPP SISTPFPSSD  60
FHSLPSFPPP LPTPTSTISY PCTFFYQTAP QPMGSESCST STTENTQIFS TGFSGYGMEQ  120
PGSIGLNQLT PAQIQQIQAQ INFQTQQQHQ MMFHDGYHHH ASTMNLLGPK PVQMKQSGSP  180
PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YMLRGDFARL  240
NFPHLRHNGS LIGGEFGEYN PLHSSVDAKL KEICESLAQG KSIDSRKKKT SKGSSAAALV  300
KMEEEESKVV EGGSESDGSG SGSGGSSPVT DLTFPEFTQE ESTWDMCSEN TLLQKYPSHE  360
IDWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21185243160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507154.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E44e-86RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S4D1L30.0A0A1S4D1L3_TOBAC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_009613405.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-56related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]