PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02213g03002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 910aa MW: 101797 Da PI: 7.1122

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02213g03002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.2	2.5e-09	266	327	20	82
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 + +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf Niben101Scf02213g03002.1 266 QQGRGKTRADKDREVADFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ-GSKSYF 327 445788999999**************************************974444.355666 PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MDENKGEITK KQAQQQHLSN SPDDSNQDSP DNTIPQQQPP QTVISGAPYI SSSLYNIPGG 60 AATTSVSFEQ QQQQQQFEVV NPKRPRYTAS QWKFIPSSSS SQQQQQKPAI QVNILSTESS 120 PISPSPQAAA TNPQTQAASS SSSQQQQQKP ASQVNILSTE SSPISPSPQA AATNPQTQAA 180 SSSDTTSSPS HSPRPSASGQ ETSKAEAGEQ VHQQHQQFRK GKYVSPVWKP NEMLWLARAW 240 KIQYQGGSSE LHLEGSQEMS TAAGVQQGRG KTRADKDREV ADFLNRHGVN RDAKTAGTKW 300 DNMLGEFRKV YEWERGAERE QGSKSYFRLS PYERKMNRLP ASFDEEVFEE LSQFMGPRMR 360 SPQSRGGVGV GSQATIVVSL SDTVTRSLPP PPPFREDDLP LSARAKQLAI PISGTEALLH 420 GTRGGFLGYD TTTTSLDIGG PSSSTSSKEL RRIGKIRMIW EESVSLWAEE GEHHRGRVKL 480 QGTSFLNADE IAFLDDSTVA CAMEAFEDGP MKGFSVDRFH SGVQLKVFGR RKSSSAAAPS 540 GPNERLQLPS SEFPIRSATP WEFQDPTEYY VGCLRSPPPT LPSLFELSWH LQQPPPEELR 600 FPIRRDVFKD LPQGKELFFT TSAELLDCRG ITYEVMSSIM RPNPSLSTAT DRDSYIGLWD 660 DCINRIISKF CSIEMVFVRK SNSSFSLAET VQDQWPNVTA FLRNFCLWRG EETGQLIEGQ 720 LDPSSSIVEK LLWTYMDLPY VLGYYAVGFI VTFCALSRSQ DRIIRTDLYT VDLSAPVERL 780 KALVPCWRIA GLLPLLADQC FHYMSNNGSN LKHLPYTDFE RIDLGNGNYV EMTPNTVVRY 840 FSSKRKWVAV KEIYDFLDHR IPHAEFVFRA SEKDLSLVVK ENGWQSKKYT IFLTTGSHMR 900 NLFLGHLKRI

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MDENKGEITK KQAQQQHLSN SPDDSNQDSP DNTIPQQQPP QTVISGAPYI SSSLYNIPGG  60
AATTSVSFEQ QQQQQQFEVV NPKRPRYTAS QWKFIPSSSS SQQQQQKPAI QVNILSTESS  120
PISPSPQAAA TNPQTQAASS SSSQQQQQKP ASQVNILSTE SSPISPSPQA AATNPQTQAA  180
SSSDTTSSPS HSPRPSASGQ ETSKAEAGEQ VHQQHQQFRK GKYVSPVWKP NEMLWLARAW  240
KIQYQGGSSE LHLEGSQEMS TAAGVQQGRG KTRADKDREV ADFLNRHGVN RDAKTAGTKW  300
DNMLGEFRKV YEWERGAERE QGSKSYFRLS PYERKMNRLP ASFDEEVFEE LSQFMGPRMR  360
SPQSRGGVGV GSQATIVVSL SDTVTRSLPP PPPFREDDLP LSARAKQLAI PISGTEALLH  420
GTRGGFLGYD TTTTSLDIGG PSSSTSSKEL RRIGKIRMIW EESVSLWAEE GEHHRGRVKL  480
QGTSFLNADE IAFLDDSTVA CAMEAFEDGP MKGFSVDRFH SGVQLKVFGR RKSSSAAAPS  540
GPNERLQLPS SEFPIRSATP WEFQDPTEYY VGCLRSPPPT LPSLFELSWH LQQPPPEELR  600
FPIRRDVFKD LPQGKELFFT TSAELLDCRG ITYEVMSSIM RPNPSLSTAT DRDSYIGLWD  660
DCINRIISKF CSIEMVFVRK SNSSFSLAET VQDQWPNVTA FLRNFCLWRG EETGQLIEGQ  720
LDPSSSIVEK LLWTYMDLPY VLGYYAVGFI VTFCALSRSQ DRIIRTDLYT VDLSAPVERL  780
KALVPCWRIA GLLPLLADQC FHYMSNNGSN LKHLPYTDFE RIDLGNGNYV EMTPNTVVRY  840
FSSKRKWVAV KEIYDFLDHR IPHAEFVFRA SEKDLSLVVK ENGWQSKKYT IFLTTGSHMR  900
NLFLGHLKRI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775235.1	0.0	PREDICTED: uncharacterized protein LOC104225161
TrEMBL	A0A1U7WLU2	0.0	A0A1U7WLU2_NICSY; uncharacterized protein LOC104225161
STRING	XP_009775235.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-09	Trihelix family protein