PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02207g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 233aa    MW: 27021.1 Da    PI: 5.2118
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02207g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.4e-121802171048
                               HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +ll+++v ++G + W+ Ia+++  gR +kqc++rw+++l
  Niben101Scf02207g05006.1 180 KLLIHLVGKFGVRKWSEIAQMLK-GRIGKQCRERWYNHL 217
                               79********************9.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-6170219IPR001005SANT/Myb domain
PROSITE profilePS5129417.631170221IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-20179231IPR009057Homeodomain-like
SuperFamilySSF466892.99E-15179231IPR009057Homeodomain-like
PfamPF139212.1E-12179231No hitNo description
CDDcd001671.29E-10180217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MELDPSNKQD FSFHPIFVPN NNSLKPELYD GFCIKSKDYY LQDFQHLDLN YIFNNSTGNF  60
MIDTNGFDPF DPFSNEDNFS SLGDFNFSYE LKPFDQENGE SGNTIKENTM DVNYTYDESC  120
EDVKPLNFVV PDESSSCVTN GSNCKLEIGE LRKNRKVKRN DQSSLLSSST KKLGRGRNKK  180
LLIHLVGKFG VRKWSEIAQM LKGRIGKQCR ERWYNHLRPD IKKDLWTEEE EGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-171822311564MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-171822311564C-Myb DNA-Binding Domain
1msf_C8e-171822311564C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248458.11e-138PREDICTED: transcription factor MYB98-like
TrEMBLA0A1J6IMW21e-137A0A1J6IMW2_NICAT; Transcription factor myb98
STRINGXP_009603629.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-23myb domain protein 98