PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02207g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 337aa    MW: 38758.3 Da    PI: 5.6435
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02207g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEde+l+d+++++G g+W+++++  g+ R++k+c++rw +yl
  Niben101Scf02207g00010.1 14 KGLWSPEEDEKLYDYITKFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                              678*******************************************97 PP

2Myb_DNA-binding513.3e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg +++eE+++++++++ lG++ W+ Ia  ++ gRt++++k++w++yl
  Niben101Scf02207g00010.1  67 RGMFSQEEEDIILNLHEVLGNR-WAQIATQLP-GRTDNEIKNFWNSYL 112
                               788*******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-24964IPR009057Homeodomain-like
PROSITE profilePS5129419.029961IPR017930Myb domain
SuperFamilySSF466899.9E-3012108IPR009057Homeodomain-like
SMARTSM007174.6E-131363IPR001005SANT/Myb domain
PfamPF002493.8E-151461IPR001005SANT/Myb domain
CDDcd001671.63E-101761No hitNo description
PROSITE profilePS5129425.79262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2665117IPR009057Homeodomain-like
SMARTSM007177.9E-1566114IPR001005SANT/Myb domain
PfamPF002496.3E-1567112IPR001005SANT/Myb domain
CDDcd001671.20E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRRHSVFVKE KLKKGLWSPE EDEKLYDYIT KFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDIILN LHEVLGNRWA QIATQLPGRT DNEIKNFWNS YLKKKLIKQG  120
IDPNTHKPLS ENQVRNETNC TDKASMLLIP ELPNMSILAD MEQPFHLGET SVDCEANRQL  180
TEVSRNPLVS KQXVSRNPLV SKQVFDPLFL FEFQANVDPS EYNSELLGQS QQNLRPYDHQ  240
NQIEGNPNFG FCSMPSLTYF EHGHMAETEF SDSSSSRMSL LYTSEAKESS SSSSNMKNHH  300
NAAEIQMNEM LGNPQELSWN PENKIDSVSV SLQWDQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255466.10.0PREDICTED: myb-related protein 330-like isoform X2
TrEMBLA0A1J6HW840.0A0A1J6HW84_NICAT; Transcription factor myb86
STRINGXP_009773279.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.12e-75myb domain protein 50