PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02207g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 38758.3 Da PI: 5.6435 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+d+++++G g+W+++++ g+ R++k+c++rw +yl Niben101Scf02207g00010.1 14 KGLWSPEEDEKLYDYITKFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++++++++ lG++ W+ Ia ++ gRt++++k++w++yl Niben101Scf02207g00010.1 67 RGMFSQEEEDIILNLHEVLGNR-WAQIATQLP-GRTDNEIKNFWNSYL 112 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-24 | 9 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.029 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.9E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.792 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MRRHSVFVKE KLKKGLWSPE EDEKLYDYIT KFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQEEEDIILN LHEVLGNRWA QIATQLPGRT DNEIKNFWNS YLKKKLIKQG 120 IDPNTHKPLS ENQVRNETNC TDKASMLLIP ELPNMSILAD MEQPFHLGET SVDCEANRQL 180 TEVSRNPLVS KQXVSRNPLV SKQVFDPLFL FEFQANVDPS EYNSELLGQS QQNLRPYDHQ 240 NQIEGNPNFG FCSMPSLTYF EHGHMAETEF SDSSSSRMSL LYTSEAKESS SSSSNMKNHH 300 NAAEIQMNEM LGNPQELSWN PENKIDSVSV SLQWDQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255466.1 | 0.0 | PREDICTED: myb-related protein 330-like isoform X2 | ||||
TrEMBL | A0A1J6HW84 | 0.0 | A0A1J6HW84_NICAT; Transcription factor myb86 | ||||
STRING | XP_009773279.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 2e-75 | myb domain protein 50 |