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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf02188g00002.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | WRKY | ||||||||
| Protein Properties | Length: 129aa MW: 14603.4 Da PI: 10.4267 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 33.6 | 7.8e-11 | 98 | 118 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefp 21
ldDgy+WrKYGqK vk++++p
Niben101Scf02188g00002.1 98 LDDGYRWRKYGQKAVKNNNYP 118
59*****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51257 | 5 | 1 | 16 | No hit | No description |
| Gene3D | G3DSA:2.20.25.80 | 1.8E-12 | 83 | 118 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 1.96E-9 | 90 | 119 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 12.277 | 93 | 118 | IPR003657 | WRKY domain |
| SMART | SM00774 | 0.0055 | 98 | 127 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 4.6E-7 | 99 | 118 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 129 aa Download sequence Send to blast |
MENRSITMVH YGSTSCARTI SDSFSNSTNI GYNSMNGWTS GLKTEISNST AREQNSPVGM 60 VSSENHTTTI ISSLKKKGDK KIKKPRFAFQ TRSQVDILDD GYRWRKYGQK AVKNNNYPSF 120 TIMNENFKL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009788059.1 | 3e-55 | PREDICTED: probable WRKY transcription factor 43 | ||||
| Refseq | XP_016437762.1 | 3e-55 | PREDICTED: probable WRKY transcription factor 43 | ||||
| TrEMBL | A0A1S3XCY2 | 7e-54 | A0A1S3XCY2_TOBAC; probable WRKY transcription factor 43 | ||||
| TrEMBL | A0A1U7XM87 | 7e-54 | A0A1U7XM87_NICSY; probable WRKY transcription factor 43 | ||||
| STRING | XP_009788059.1 | 1e-54 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2204 | 24 | 61 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G13080.1 | 1e-18 | WRKY DNA-binding protein 75 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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