PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02182g21007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 176aa MW: 19614.2 Da PI: 8.2081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 18 | 69 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f+t+e A +a++ a++ l+g+ Niben101Scf02182g21007.1 18 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPELAVAAYDSAALHLKGH 69 68*****999.**********8...557***********************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-21 | 18 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-31 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.983 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.26E-29 | 20 | 78 | No hit | No description |
PRINTS | PR00367 | 3.0E-12 | 20 | 31 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-30 | 20 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MEENNNTSKP SRRGGVTSPY RGVRKRKWGK WVSEIREPGK KTRIWLGSFD TPELAVAAYD 60 SAALHLKGHA AKLNFPELVE FLPKPSSCSP DDIRFAAQEA ALKVKRNSEQ IASSSATNNL 120 APVTIGLSPS HIQAINDFPM DSPKMWSDVT REYVGEETMF TCNDYEMIST TGPFYL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-16 | 20 | 79 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-16 | 20 | 79 | 6 | 66 | ATERF1 |
3gcc_A | 6e-16 | 20 | 79 | 6 | 66 | ATERF1 |
5wx9_A | 7e-16 | 14 | 76 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244673.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 9e-48 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | A0A1J6JBN5 | 1e-110 | A0A1J6JBN5_NICAT; Ethylene-responsive transcription factor erf021 | ||||
STRING | XP_009757757.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-42 | ERF family protein |