PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02151g04021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 510aa    MW: 56931.9 Da    PI: 8.1078
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02151g04021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.2e-41216291277
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  Niben101Scf02151g04021.1 216 CQVHGCNKDLSSSKDYHKRHKVCDEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291
                               **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-33210277IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.547213290IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-39214294IPR004333Transcription factor, SBP-box
PfamPF031104.0E-32216289IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MEPLSYGLEG RGFLFPDNVE LSVDPFSRSR NIAKEWNLNP FCDVDKPICG SSQEITESTG  60
FLESGIADIF KKSAASSPCP GALSGEIGNG SMLELGAMFN HSATKSNNPM SLPICLKLDE  120
LSDYGEVRTS QSSKESSVLS SPESSLPTGK AAQKKSLHSQ FPISQVRGQK EEESIVYREV  180
KSNQSLKRNS DLSSVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLSSSKD YHKRHKVCDE  240
HSKTAIVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTRWGSRF  300
LDLTQRRVPF LFPEILPGSF FYQENYEVNN NNQNLKLERK PFCISQLAMS VTSRQSPAES  360
IQHQYGMRKQ DLSKVPVGST ILSVQEFSAG QNSSCALSLL SAHSKNLLHN STDISSTPPW  420
MVKGNYHAYI KGDHHLTPIE QDGVVHVPEI QRDGHDQRAN SMNSKNCFSP EGGATMDLVQ  480
LSSHLLRVEQ QKNSVQVKQE NDVFCSLAST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28211289684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788762.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_009788763.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_016502562.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A1S4CMR20.0A0A1S4CMR2_TOBAC; squamosa promoter-binding-like protein 6
TrEMBLA0A1U7XD130.0A0A1U7XD13_NICSY; squamosa promoter-binding-like protein 6
STRINGXP_009788762.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-54SBP family protein