PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02151g01004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19955.4 Da    PI: 6.794
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02151g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.8e-31959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtf+kRrng+lKKA+E+SvLCdaeva+iifs++gklye++s
  Niben101Scf02151g01004.1  9 KRIENKINRQVTFAKRRNGLLKKAYEISVLCDAEVALIIFSTRGKLYEFCS 59
                              79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.263161IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-34283IPR002100Transcription factor, MADS-box
CDDcd002656.01E-46276No hitNo description
PRINTSPR004045.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYEISVLCD AEVALIIFST RGKLYEFCSN  60
SSMSKTVEKY HKYNYAAVEG SQPSTDLQTQ HMIDELTELQ QKLEELGVAI QTSWQYGEQS  120
LQYRQQQPDG FFHHGDSNNT MPIRYNTVLP EDAEPSIQHA TEVVHGYQFY IGGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22174173MEF2C
5f28_B3e-22174173MEF2C
5f28_C3e-22174173MEF2C
5f28_D3e-22174173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256938.11e-97PREDICTED: MADS-box protein CMB1-like
SwissprotK4BND86e-52MADS4_SOLLC; MADS-box protein 04g005320
TrEMBLA0A1J6HU043e-96A0A1J6HU04_NICAT; Developmental protein sepallata 1
STRINGXP_009615088.16e-83(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.35e-46MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]