PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02111g26009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 25890.5 Da PI: 4.5969 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.2e-15 | 14 | 67 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 rg+WT eEd l++ ++++G g+W++ ar+ g gRt++++k++w++ Niben101Scf02111g26009.1 14 RGSWTVEEDFTLINHIALHGEGCWNSLARCAGgpkllnilPGRTDNEIKNYWRT 67 89**************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-19 | 6 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.236 | 9 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-13 | 9 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 13 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-13 | 14 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.65E-12 | 16 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDHRVNEDNM DLKRGSWTVE EDFTLINHIA LHGEGCWNSL ARCAGGPKLL NILPGRTDNE 60 IKNYWRTRVQ KHAKQLKCDV NSKQFKDTLR YLWMPRLVER IQASSNSAAT TSITSNDNSN 120 NHASTSVMQE NSSVTASSEN SMATQVSPVS DISDCCYNNY PINQSDYGEL LISPTGYFQH 180 GALDIRTVDY NNQQNMSQWM EETEDVSDNL WNIEDMLFLQ QQLNNDV |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799770.1 | 1e-127 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_016494481.1 | 1e-127 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 1e-48 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A1S4C005 | 1e-126 | A0A1S4C005_TOBAC; transcription factor MYB108-like | ||||
TrEMBL | A0A1U7YLQ8 | 1e-126 | A0A1U7YLQ8_NICSY; transcription factor MYB108-like | ||||
STRING | XP_009799770.1 | 1e-126 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 8e-47 | myb domain protein 78 |
Publications ? help Back to Top | |||
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