PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02081g03009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21973.8 Da PI: 8.8274 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.4 | 1.6e-11 | 9 | 107 | 5 | 97 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLp.k...kvkaeekewy.fFskrdkkyatgkrknr.atksgy 82 frF+Ptd+ +++ L+ v+++ +++ + ++vd+y k ePw++ + + + e++ y +F+++ kk++ + r +r + ++g+ Niben101Scf02081g03009.1 9 FRFRPTDSKGLMFLLRFAVAQEMHDAGFITTKVDVYgKQEPWEIYdHgvpCGDDEDNTSYrYFITKLKKKS-NARYHRsVRNKGT 92 9********998888888888888885557888*99456*****743555333344444424444444444.5677775778*** PP NAM 83 Wkatgkdkevlskkg 97 Wk+ k k+v+ ++ Niben101Scf02081g03009.1 93 WKQDNKGKPVHYQNM 107 **********98632 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 9.622 | 5 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-7 | 7 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-12 | 9 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MEQLGQVDFR FRPTDSKGLM FLLRFAVAQE MHDAGFITTK VDVYGKQEPW EIYDHGVPCG 60 DDEDNTSYRY FITKLKKKSN ARYHRSVRNK GTWKQDNKGK PVHYQNMGKS SSEKDGHWLM 120 KKYELCKVIL HKFDKDRRDY VLCAIKKLKH VNSSSETSTI TTLHNISDGT DEDQSAYDMQ 180 CQTDKTSVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009782736.1 | 1e-98 | PREDICTED: protein CUP-SHAPED COTYLEDON 1-like | ||||
TrEMBL | A0A1U7WZB9 | 3e-97 | A0A1U7WZB9_NICSY; protein CUP-SHAPED COTYLEDON 1-like | ||||
STRING | XP_009782736.1 | 5e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 2e-08 | NAC domain containing protein 32 |