PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02078g08043.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 535aa MW: 58355.1 Da PI: 8.8189

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02078g08043.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf02078g08043.1 98 FVCEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	12.6	0.0004	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Niben101Scf02078g08043.1 174 WKCEKCSKKYAVQSDWKAHSKTC 196 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	97	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.39E-6	97	120	No hit	No description
PROSITE profile	PS50157	10.949	98	120	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.6E-5	98	120	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	139	169	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.8E-4	162	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.39E-6	169	194	No hit	No description
SMART	SM00355	140	174	194	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MIKGFMNQQN QTVVVEENMS NLTSASGEAA SVSSCNRNDN NNNTTGGIYP PQYNFAPTNQ 60 QIQAQHQIKK KRNQPGNPDP GAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRT SKEIRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCEKCS 180 KKYAVQSDWK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAKESA RAITGNPILP 240 SQTGSSSHMN LQFQPSQFNS HEFPATFSLK KEQQTGFNLR PEIPPWLMTC QPLVGGGHGP 300 PPQQPMDLSS SIFQSTRFDQ DYTPNHGQEI NPNPSPNFNS PGGLGSPHIS ATALLQKAAQ 360 MGATMSNKSS TVSAAATGPS PTMLMRPHQF HVSAAAVESV SNNTTDVGLN LSSSEDLTTG 420 FLNSLASYGN KAATITATAA ATVSPLTSAP SPTSFLMTSF SSANTTGFEG SNFEDEFGGI 480 GILNSTKNND GNDDMTKDFL GLRPLSHSDI FNIAGLVNTT SNENHQSQNH KTWQS

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MIKGFMNQQN QTVVVEENMS NLTSASGEAA SVSSCNRNDN NNNTTGGIYP PQYNFAPTNQ  60
QIQAQHQIKK KRNQPGNPDP GAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRT SKEIRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCEKCS  180
KKYAVQSDWK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAKESA RAITGNPILP  240
SQTGSSSHMN LQFQPSQFNS HEFPATFSLK KEQQTGFNLR PEIPPWLMTC QPLVGGGHGP  300
PPQQPMDLSS SIFQSTRFDQ DYTPNHGQEI NPNPSPNFNS PGGLGSPHIS ATALLQKAAQ  360
MGATMSNKSS TVSAAATGPS PTMLMRPHQF HVSAAAVESV SNNTTDVGLN LSSSEDLTTG  420
FLNSLASYGN KAATITATAA ATVSPLTSAP SPTSFLMTSF SSANTTGFEG SNFEDEFGGI  480
GILNSTKNND GNDDMTKDFL GLRPLSHSDI FNIAGLVNTT SNENHQSQNH KTWQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-35	170	231	3	64	Zinc finger protein JACKDAW
5b3h_F	8e-35	170	231	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	136	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016479409.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_016479410.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-126	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S4ARV0	0.0	A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRING	XP_009774627.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-107	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]