PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02063g05001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 238aa    MW: 26712.7 Da    PI: 5.0462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02063g05001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-1891141255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                ++GVr+++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g
  Niben101Scf02063g05001.1  91 SFRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFSIRG 141
                               59*******.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-1990150No hitNo description
PROSITE profilePS5103222.82791149IPR001471AP2/ERF domain
SMARTSM003801.3E-3791155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2991150IPR001471AP2/ERF domain
PfamPF008471.2E-1292141IPR001471AP2/ERF domain
PRINTSPR003671.7E-1292103IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2292151IPR016177DNA-binding domain
PRINTSPR003671.7E-12131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDSSCSSHFF YPMNSDLSSD SSWEWSTLNS TNSLPFNLND SEEMLLFGVL TNAAQETTSE  60
TVTSYHVKEE EVSSKSKVVK EIEEKPAKEK SFRGVRRRPW GKFAAEIRDS TRNGVRVWLG  120
TFDSPEAAAL AYDQAAFSIR GTSAILNFPV ETVQESLRDM KCHVDEDGSP VVALKKRHSM  180
RKRSLNSKNN SNSKVVREVK MENVNVVVFE DLGADYLEQL LSSSSSDQSS CNEAFLPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2787150164ATERF1
3gcc_A2e-2787150164ATERF1
5wx9_A2e-27871511074Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233068.11e-148PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-69ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1J6KC411e-146A0A1J6KC41_NICAT; Ethylene-responsive transcription factor 1b
STRINGXP_009606435.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-58ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]