PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02046g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 897aa MW: 100349 Da PI: 6.2382

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02046g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.7e-29	576	627	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Niben101Scf02046g00002.1 576 AEKTITLEILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 627 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	564	647	IPR003035	RWP-RK domain
Pfam	PF02042	9.4E-26	579	627	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-23	792	880	No hit	No description
SMART	SM00666	3.9E-24	796	879	IPR000270	PB1 domain
PROSITE profile	PS51745	25.619	796	880	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-21	797	875	No hit	No description
Pfam	PF00564	1.0E-18	798	877	IPR000270	PB1 domain
CDD	cd06407	7.94E-40	798	879	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence Send to blast
MDESVIPSNP LLTNQSDYFM DLDYTDGLLL EGCWLETTDG NEFFQNSPAT FNAPFDSSFM 60 WPNTIDTNNV EFNGIPSKYS QQEKQIQPFG ENVNNAMCTS GQSEGLSVEA PELNRMWWFG 120 PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR HVLSTTHQPF LLDLSCPRLA 180 NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR LFRSEEYPRV EHAQQYDVRG 240 SLAVPVFEQG SRNCLGVIEV VMTTQRIKYR PELESAVNLR TSEVSTTQNA KVCDLSYQAA 300 LSEILEVLKS ACETHGLSLA QTWVPCVQQG KGGCRHSEEN LIHCVSTEDS ACYIADPHIR 360 GFHEACSEHH LLKGQGVVGR AFMTNQPCFS ADLTSYSKTE YPLSHHAQMF GLQAAVAIRL 420 RSISTGSCDF VLEFFLPSDC RNPEEQRKML TSLSIIIQNV CRTLRVVTDK ELQEEAVSIG 480 EAANPSFIRS NKEHTETSQE RTSWTSCDAE FQESSTVVSA FHDEKPDQML RKEPVEFRHH 540 NDSGYGMDFA LNENRCASGD GVSRNGKKGD RRRTKAEKTI TLEILQQYFA GSLKDAAKSI 600 GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS LQKIQRVIDS VQGASGSLQI ESFYSNFPEL 660 ASPNVSRLSP FADSKSNEHP KALNAQQEGC VRSPHAAASK SPSSACSRSS SSSQCCSSGT 720 KPQSSPLSIA GNDDPIVQEE SVENAVKRVK SEPELHLSSE ALKPLPRSQS HACVSENPKS 780 EILLMKKGPL RSHEEAPRVK VTHGEEKIRF RMQNSWRYSE LLREITRRFG IDDPSGLQLK 840 YMDDDSEWVL LTCDADLEEC IDVCMSSQNQ MIKLILVRDS QHHIGSSFGS SSPILVQ

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence Send to blast

MDESVIPSNP LLTNQSDYFM DLDYTDGLLL EGCWLETTDG NEFFQNSPAT FNAPFDSSFM  60
WPNTIDTNNV EFNGIPSKYS QQEKQIQPFG ENVNNAMCTS GQSEGLSVEA PELNRMWWFG  120
PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR HVLSTTHQPF LLDLSCPRLA  180
NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR LFRSEEYPRV EHAQQYDVRG  240
SLAVPVFEQG SRNCLGVIEV VMTTQRIKYR PELESAVNLR TSEVSTTQNA KVCDLSYQAA  300
LSEILEVLKS ACETHGLSLA QTWVPCVQQG KGGCRHSEEN LIHCVSTEDS ACYIADPHIR  360
GFHEACSEHH LLKGQGVVGR AFMTNQPCFS ADLTSYSKTE YPLSHHAQMF GLQAAVAIRL  420
RSISTGSCDF VLEFFLPSDC RNPEEQRKML TSLSIIIQNV CRTLRVVTDK ELQEEAVSIG  480
EAANPSFIRS NKEHTETSQE RTSWTSCDAE FQESSTVVSA FHDEKPDQML RKEPVEFRHH  540
NDSGYGMDFA LNENRCASGD GVSRNGKKGD RRRTKAEKTI TLEILQQYFA GSLKDAAKSI  600
GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS LQKIQRVIDS VQGASGSLQI ESFYSNFPEL  660
ASPNVSRLSP FADSKSNEHP KALNAQQEGC VRSPHAAASK SPSSACSRSS SSSQCCSSGT  720
KPQSSPLSIA GNDDPIVQEE SVENAVKRVK SEPELHLSSE ALKPLPRSQS HACVSENPKS  780
EILLMKKGPL RSHEEAPRVK VTHGEEKIRF RMQNSWRYSE LLREITRRFG IDDPSGLQLK  840
YMDDDSEWVL LTCDADLEEC IDVCMSSQNQ MIKLILVRDS QHHIGSSFGS SSPILVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244880.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_019244882.1	0.0	PREDICTED: protein NLP4-like
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A1J6IGZ9	0.0	A0A1J6IGZ9_NICAT; Protein nlp4
STRING	XP_009759077.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein