PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02031g06005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 858aa    MW: 94114.3 Da    PI: 7.4238
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02031g06005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-06443463526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                Cr++++ G C+ G +CkF+H+
  Niben101Scf02031g06005.1 443 YCRHYLK-GRCSEGKKCKFSHD 463
                               5******.*************7 PP
2zf-CCCH18.63.4e-06501519826
                               GGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                               ++a +G+C++G+ C F+Hg
  Niben101Scf02031g06005.1 501 YYASNGFCSRGADCLFSHG 519
                               89999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.328438465IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023438464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6439463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4443463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756467494IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027467493IPR000571Zinc finger, CCCH-type
SMARTSM003561.1495520IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.638498521IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MENSHIGALN PLQNPFPFPP HRRRPLMSQT YTTLLQILSY NCPTTDSTSE FQKPDDNGSK  60
LGKENEVEEL VDRHLIRSDN LLVNGPAHKE SDNLVVQQGS GGGNEGSSRS GYRDFTSAPM  120
EVDLDLSNRI SDAIQGNRGH ARTNDIDDMN RLVHKTHSFN DQMVEEPGNR CSTHESEVKE  180
SDPVGPVELD KELSIDDVCA AIESCFGADT VAELSQPPEV SGEEIPVPKT HLTEEMEHGL  240
RLKEMELETL ISSAGATDLS VHVPMDEEIE EGEVSGDFMV FDESDYDIVN DFRDEKKVEA  300
EKYSADIVDR EDFSFDARYN PPQKRDAYAS SSMDAVDEDY TSLGGKFIRK FGEEPKDNVE  360
KVFCSKDAET RKVCVYDSIL DSGNVAKQDA DIGKKKKKRG PLTKEKRAKK KAKERIKRAE  420
KNRKLGVKRL KLPPVVKPKV MTYCRHYLKG RCSEGKKCKF SHDTTPLTKS KPCCHFARQS  480
CMKGDDCPFD HQLSKYPLSN YYASNGFCSR GADCLFSHGI TDKIAAVTSS TASNLELMSP  540
SAPSNSNSLM QINTYGVAHK DVNSSSGSAG LVPGKRTEQT ISEPVQKPAA CTPKGVTFLS  600
HGKSLQGDAR KREKAGLSSK ADDVGKLSCQ MIHSKSNNVQ KPDGLIKGVS TRTPQGINFL  660
SFGQAPSVEP SGDTYSGLFN MDYGVKKLLP RGMNNSKEAA TWAKRDGSVK DDNQANLSAS  720
LWSMNQMSIR TPHASTPRGI SFLSAEKAAQ DSSHPNEFKR ASSPIQRRTR AAEKTCHEMP  780
FRQSSSLFPA GQSLTHQSAQ KCSVGIASSS KTPFLANTQP SSIQKALQST LAFAAKFDLG  840
VKFGTSNGST IITSSINH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405413KRAKKKAKE
2608614ARKREKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233113.10.0PREDICTED: uncharacterized protein LOC109213736 isoform X2
TrEMBLA0A1J6KC000.0A0A1J6KC00_NICAT; Zinc finger ccch domain-containing protein 65
STRINGXP_009619048.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720