PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02029g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 743aa MW: 82665.8 Da PI: 6.9186

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02029g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	520	557	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Niben101Scf02029g01003.1 520 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 557 664459******************************88 PP
2	BELL	121.7	3.1e-39	380	451	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+ +eVdkrY++y+eq+q+v++sF+ v+g g+a+pYt+lA+ka+SrhF+cLkdaia q+ Niben101Scf02029g01003.1 380 DRIEHQRRKVKLLSMFDEVDKRYNHYCEQMQMVVNSFDLVMGFGAAAPYTALAQKAMSRHFKCLKDAIAAQL 451 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.9E-71	304	449	IPR006563	POX domain
Pfam	PF07526	1.1E-51	311	448	IPR006563	POX domain
PROSITE profile	PS50071	12.487	498	561	IPR001356	Homeobox domain
CDD	cd00086	2.79E-12	501	562	No hit	No description
SMART	SM00389	4.0E-9	501	565	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	503	567	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.2E-28	504	567	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-18	518	557	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MVTHFNKFKA AHNPIQLPEK SNSLDNSMSQ DYHHQGLFSF SSAVERPQDE QQQQHITHQI 60 RQEKLRVDGL NPPPPLVAIE EEQSSGLQVY GTAGMLSEMF NFPPGITTAT ATELLQNQLT 120 QCYRNPNQRP QQQQPPTTNL GSEWFSNRQG MVPSESIDNT KVWNDRDSIT ALYQRQHNHI 180 SSIHTVESAS AMNLFSMNPQ PRSPSPSSAH PTTTLQGVPN AIGGHFSQFI CGGATGNHFN 240 TPNDIGGVNI MQGLSLSLSS SLQHLEAAKV EDQLRMSGGE MLFFNQGAGQ NHHHQIHVGF 300 GSSQGLVNVW RNSKYANAAQ ELLDEFCSVG RSQLFKKNKV SRNNNTKTSS NPNSNNPSGN 360 NNNNKNNNSS KDLSPLSVAD RIEHQRRKVK LLSMFDEVDK RYNHYCEQMQ MVVNSFDLVM 420 GFGAAAPYTA LAQKAMSRHF KCLKDAIAAQ LKHSCELLGE KDATTSGLTK GETPRLKLIE 480 KSLRQQQRAI QQMGMMDAEA WRPQRGLPER SVTILRAWLF EHFLHPYPSD ADKHLLARQT 540 GLSRNQVSNW FINARVRLWK PMVEDMYQKE AKEEEEEDDE NMEKSQNQNS SNNIAQTPTP 600 NSSTNTITTG SGTETKTAAT VRAATILSVA SDKRSEINVP ENDSSIVAMN RLCFSENHTE 660 HHESSSRATH EMAHHSFPAI QDSDGMSRRE AVSGVEYGTT NIMDISDNGT RMIRFGTTAA 720 GDVSLTLGLH HAGDLPENTH LFG

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MVTHFNKFKA AHNPIQLPEK SNSLDNSMSQ DYHHQGLFSF SSAVERPQDE QQQQHITHQI  60
RQEKLRVDGL NPPPPLVAIE EEQSSGLQVY GTAGMLSEMF NFPPGITTAT ATELLQNQLT  120
QCYRNPNQRP QQQQPPTTNL GSEWFSNRQG MVPSESIDNT KVWNDRDSIT ALYQRQHNHI  180
SSIHTVESAS AMNLFSMNPQ PRSPSPSSAH PTTTLQGVPN AIGGHFSQFI CGGATGNHFN  240
TPNDIGGVNI MQGLSLSLSS SLQHLEAAKV EDQLRMSGGE MLFFNQGAGQ NHHHQIHVGF  300
GSSQGLVNVW RNSKYANAAQ ELLDEFCSVG RSQLFKKNKV SRNNNTKTSS NPNSNNPSGN  360
NNNNKNNNSS KDLSPLSVAD RIEHQRRKVK LLSMFDEVDK RYNHYCEQMQ MVVNSFDLVM  420
GFGAAAPYTA LAQKAMSRHF KCLKDAIAAQ LKHSCELLGE KDATTSGLTK GETPRLKLIE  480
KSLRQQQRAI QQMGMMDAEA WRPQRGLPER SVTILRAWLF EHFLHPYPSD ADKHLLARQT  540
GLSRNQVSNW FINARVRLWK PMVEDMYQKE AKEEEEEDDE NMEKSQNQNS SNNIAQTPTP  600
NSSTNTITTG SGTETKTAAT VRAATILSVA SDKRSEINVP ENDSSIVAMN RLCFSENHTE  660
HHESSSRATH EMAHHSFPAI QDSDGMSRRE AVSGVEYGTT NIMDISDNGT RMIRFGTTAA  720
GDVSLTLGLH HAGDLPENTH LFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-15	507	564	5	62	Homeobox protein Meis2
3k2a_B	3e-15	507	564	5	62	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769608.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-142	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U7VTC8	0.0	A0A1U7VTC8_NICSY; BEL1-like homeodomain protein 4
STRING	XP_009769608.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-122	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]