PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02004g00019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 340aa    MW: 38520.4 Da    PI: 7.0125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02004g00019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13153200355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Niben101Scf02004g00019.1 153 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 200
                               6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-12155204No hitNo description
SuperFamilySSF474594.71E-17155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEYHGFNQQW PINSFDELSA ISIAASFGEN LHESFISQPN FGLKRPAEMS QNIYHERSLK  60
NPKTIQSWNN SYENDHILSS HLINSNNYTN QVVNVKPKEE MTTMSSNSSI TFAAEHQNMV  120
SQDSFANQNY MIKANCRGAK STVSTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL  180
KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT KKKSVESVVF VKKYELYGDG ENSSSDENYS  240
SGTLPIDEPL PEIEARFSER DVLVRIHCER KKGLVDKTVA EIEKLHLSVI NTCALSFGTS  300
ALDITIIAQV EKFNEYQVVG ERDKKVFLRG EEADRLCTIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14154228880Transcription factor MYC2
5gnj_B7e-14154228880Transcription factor MYC2
5gnj_E7e-14154228880Transcription factor MYC2
5gnj_F7e-14154228880Transcription factor MYC2
5gnj_G7e-14154228880Transcription factor MYC2
5gnj_I7e-14154228880Transcription factor MYC2
5gnj_M7e-14154228880Transcription factor MYC2
5gnj_N7e-14154228880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232955.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0722e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J6KYH20.0A0A1J6KYH2_NICAT; Transcription factor bhlh25
STRINGXP_009779237.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-52bHLH family protein