PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02000g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 965aa MW: 107516 Da PI: 7.1919

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02000g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.3e-29	646	696	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Niben101Scf02000g00005.1 646 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 696 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	6.7E-4	239	322	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.427	635	716	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	649	696	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.32E-23	858	953	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-20	867	947	No hit	No description
PROSITE profile	PS51745	22.836	868	950	IPR000270	PB1 domain
SMART	SM00666	2.3E-23	868	950	IPR000270	PB1 domain
CDD	cd06407	2.60E-37	869	949	No hit	No description
Pfam	PF00564	5.8E-18	869	949	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
IFKVTSRINS NGNLQTKTKT DEVCGNRADW VLEGRGKKSF MEIPLLIQIE ASYFIMEDGP 60 FTLHDMFTKL SSDNTISTSD FSEFLSDGFW LETTNHASNF LTPSSLASQT LLLDTTNAGH 120 SLPTTNQEET NKDKILFAQM DDFSSTRGEN SETSPRQLWI GPNINPNPTL SVKKRLVQAI 180 EHLKDSTRDK DVLIQIWVPV KRGGKHVLIT NNQPYFLNPS FQSLVEYRYV SQNYQFAAEK 240 DSKELVGLPG RVFLKKLPEW TPDVRFFKRE EYPRVNHAHQ YNVRGSIAVP VFETGSGTCL 300 GVVEIVTTTQ KTHYHPELED VCKALEAVNL RSSGISNPAK IKDCNESYLA ALAEIRYILT 360 CVCDTHKLPL AQTWAPCIQQ GKGGCQQSDE NFASCVTTVD EACYVRDPQV LPFHYACSEH 420 HLLKGEGVAG GAFNTNQPCF ATDITAFSKT EYPLSHHARM FGLCSAVAIR LRSIYTGSAD 480 FVLEFFLPLD CKNTEDQKQM LSSLSSVIQH SCRSLRVITD QELQEEKELL QREKVRLSAG 540 ESHEEISRKP VSPTYRDQDA SSWLSQMMDA QRKGKGAAVS QEENCKVTAN HWRESIHAST 600 YSEPNQIQDN FGPKGVSGGS LDFSSGTGSH SSGAKRAGER RRSKTEKSIS LQVLRQYFAG 660 SLKDAAKSIG VCPTTLKRIC RQHGITRWPS RKIKKVGHSL QKLQLVIDSV HGAEGAIKLS 720 SFYTNFPELT FPNNPGTSNL SASKNHDHLQ QVNTQPDGST LSPDTTTSKS TSSSGSHNSS 780 SSLFCSTDSK HLFPLTNVFA TGNATMEEHP GGMLKRAHTE AELHDMGQEE TKFFVRSQSQ 840 KIQSNHTSLE PLCALPTSSN QVIQDSATLK VKATFGKEKI RFSLQSHWGF MDVLQEVLRR 900 FNIEDGKIDL KYLDDDDEWV LLTCDADLEE CVDIHRLCKR KTIKVSLHHA YHPNLGSSFG 960 SSGPA

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

IFKVTSRINS NGNLQTKTKT DEVCGNRADW VLEGRGKKSF MEIPLLIQIE ASYFIMEDGP  60
FTLHDMFTKL SSDNTISTSD FSEFLSDGFW LETTNHASNF LTPSSLASQT LLLDTTNAGH  120
SLPTTNQEET NKDKILFAQM DDFSSTRGEN SETSPRQLWI GPNINPNPTL SVKKRLVQAI  180
EHLKDSTRDK DVLIQIWVPV KRGGKHVLIT NNQPYFLNPS FQSLVEYRYV SQNYQFAAEK  240
DSKELVGLPG RVFLKKLPEW TPDVRFFKRE EYPRVNHAHQ YNVRGSIAVP VFETGSGTCL  300
GVVEIVTTTQ KTHYHPELED VCKALEAVNL RSSGISNPAK IKDCNESYLA ALAEIRYILT  360
CVCDTHKLPL AQTWAPCIQQ GKGGCQQSDE NFASCVTTVD EACYVRDPQV LPFHYACSEH  420
HLLKGEGVAG GAFNTNQPCF ATDITAFSKT EYPLSHHARM FGLCSAVAIR LRSIYTGSAD  480
FVLEFFLPLD CKNTEDQKQM LSSLSSVIQH SCRSLRVITD QELQEEKELL QREKVRLSAG  540
ESHEEISRKP VSPTYRDQDA SSWLSQMMDA QRKGKGAAVS QEENCKVTAN HWRESIHAST  600
YSEPNQIQDN FGPKGVSGGS LDFSSGTGSH SSGAKRAGER RRSKTEKSIS LQVLRQYFAG  660
SLKDAAKSIG VCPTTLKRIC RQHGITRWPS RKIKKVGHSL QKLQLVIDSV HGAEGAIKLS  720
SFYTNFPELT FPNNPGTSNL SASKNHDHLQ QVNTQPDGST LSPDTTTSKS TSSSGSHNSS  780
SSLFCSTDSK HLFPLTNVFA TGNATMEEHP GGMLKRAHTE AELHDMGQEE TKFFVRSQSQ  840
KIQSNHTSLE PLCALPTSSN QVIQDSATLK VKATFGKEKI RFSLQSHWGF MDVLQEVLRR  900
FNIEDGKIDL KYLDDDDEWV LLTCDADLEE CVDIHRLCKR KTIKVSLHHA YHPNLGSSFG  960
SSGPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	935	944	RLCKRKTIKV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266405.1	0.0	PREDICTED: protein NLP2
Refseq	XP_019266406.1	0.0	PREDICTED: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A314L0F8	0.0	A0A314L0F8_NICAT; Protein nlp2
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein