PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01980g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 361aa    MW: 39583 Da    PI: 6.9622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01980g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20185234255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Niben101Scf01980g04003.1 185 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 234
                               59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.76E-34184244No hitNo description
SuperFamilySSF541712.62E-23185243IPR016177DNA-binding domain
SMARTSM003807.5E-38185248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32185243IPR001471AP2/ERF domain
PROSITE profilePS5103223.143185242IPR001471AP2/ERF domain
PfamPF008473.6E-14186234IPR001471AP2/ERF domain
PRINTSPR003673.5E-11186197IPR001471AP2/ERF domain
PRINTSPR003673.5E-11208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAATMDFWTS TLLDLNSSNS LQGGGELMEA LAPFIKSASP INYPPVSPSF SFPSTNSQSF  60
PISTTTSSTS TSYPYDSFSL TSHPNMSYDG CSTSTTINPT FSQGFSGIEM EQPSSIGLDQ  120
LTQAQVHQLQ AQIYLQNNHQ QKQMMSPAAT FQDSLSQQHN HHASFLGPKP VSMKQSGSPP  180
KPPKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDKAAY KLRGDFARLN  240
FPHLRHNGSL IGGEFGEYKP LHSSVDAKLQ AICQDLAQGK SIDTKKKRKV SSKKEESKKA  300
EVGSESDGSG SGSGFGSGGS STVSDVTFTE FADEDSIWDM CSENFMLQKH PSHEIDWASL  360
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22184242160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615540.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E48e-84RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S4CIB70.0A0A1S4CIB7_TOBAC; ethylene-responsive transcription factor RAP2-4-like isoform X1
STRINGXP_009615540.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-59related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]